Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01058 ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTCTGGTGGTTTGTCTGGTGGTGCCGGTGATCGGCCTCGTAATTTGCCGTAGATGGCAGATTTCAGAGGCTAAGAAGGAGGAGATCAGGAGGCTTTTGGTTTTGGCCGCGGAGGAAACTGCCAGGGCCGAGAGAGAAGCGTTATATGTGTACGGCACGTCGGTTTCTGCCGCTCCAAGCAATCAATGCGCCGTTTGCTATTTTCCTGCCACCGCACGTTGCGCTCAGTGCAAATCGGTTCGCTACTGTTCTTTTGAGTGCCAAACTGTTCATTGGCGTCAAGGTCATAAGTTAGAATGCCGTCCTCCCAGCACAATCCAACGGAGTGATGATGTAACAAGTGATCATAGCAGCAAGTTGGTACAGCAAGGCTACGCTGGAGTCTATAGTGAGAAGTTGGAAAGTGAAAGCACAGAATGTAAATCAGCCTTTGAAAAGCCCCCAATTTCTGATATCTGCATTTCTCCTAAAGTTTCATCTGGGAAGGATGAAAATATCAGATTTGAGTCCCTTGCAGAGGGAAATATAACAGATTCTATTTCGGAATCGTCCAGTAACTCATTTTCTGGATTCTCAGCTTCCACGGGTTCCACTGATTCATCTGATGATTCCTCTGTCTGTGAGAGTATAATTTCAAATGAGTATGACAGAGAGGGACCTATTTTGGTTGATTCCACCCTTGACATTCTAGACAACACTAGTGATAATAGCATGGGTGTAACCATGTCCTCTTCACCAAAGTTTGCTACTTTGGTTGATTCTACAATGCATAAATTAAATCATATCGGACCTGGTTTTAGTAAAGAAGGGAGTAAGTTTGCAGCAAATGGTAATTCAGGTTCAAGTAAGTGTAAGGGGAAAACAATTGAGCCTTCTACAGTGTTTTCGGGATTCTGGGATAAAGCACTTGATGGGATTAAAGATGATTCCAAACATGACACTCATCCATCCTACTGTGATGAATCCATGGGCAAAAGGACTGTTTCTGATTCTTCATGTCACTTTTCATTCAGTGCCATGCCTCCTTCACATGTACGAGATACCAAAACAAAGGGTTCTGATAATGCTTTCCCAAACTGTATTGGGTCTCAGAATAATAACGTGAATTCTTCGGAAGTGAGGAATTTCTCGTTCTCCAACAGTGAACTTTCCAGTGTTAGGAGTTATGTTAATCCAAATGGTTCTAAATCTGATCAATTGGATTCTAAAGACAGCTTTAGGCCACCTTTATCATCTTTCTCTCATCAGTCCCCCGGTGGCAAAGATTCAATTTGTGCAGAGGCTTTGAGAATCAATAACTTGCAAAAGACTGGCTCTATGGTATCAAATCGAGTTGTGAAGAACTGTCGCAGCACATTCAAGTCCACTGAGATTAGATGCGTGAAGCATGAGGATGCTAATTCTAATTTAGCTTCTGGAAATGAAGAGCATTCTCATTCCAGTACAAAACATGGGAATAATGACATTGAATTTGGCACTCGATCTGTCACTTCCTCTCATATTACTAGCTGCTCTGCAAATTCTAAGTGTGGCTTAAGAACTCCTGTTTTGAAAGTTGTTGATCAGTTTAGAGGATCAAATATGTCAAAGCACTTTCAATTAGCTGTTGGGAGTGATATCAGTGAAAGACACAATGACAAGGGTTTTTTTCCTTATGAATTGTTTGTCAAGCTTTATAACTCAAACAAGGAGGAGTTATGCCCATTTGGCCTTGTGAATTGTGGAAACAGTTGTTATGCCAATGCTATACTTCAGTGTTTAGCATTTACACCACCTCTGACTGCTTATTTGCTTCAAGGATTACATTCTAAATCATGTGCAAATAAGAAATGGTGTTTCACCTGCGAATTTGAAAGATTGATTTTGAAGTCAAAAGAGACAAAATCTTCAGTGTCTCCTATAAGCATAATCTCTCATTTACAGAATATTGGGAGTCAGCTTAGTAATGGGAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTATTTGCCTTATGGAAGCTGGGGTTAACGCACCAGGCTCCTTAGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGTTACCTTCGATCAAAGATAAAATGCATGAAATGTGGAGGGAAGTCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGATATATCAACCCTGGTGGAGGCCCTTCAGCGGTTTACAAGCCCTGAGACTCTGGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCCAATGTTCTTACAGTTGCATTGAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTAACTTGGCACCTTTCATGAGTGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTAGATGTCATGAATTCTGCCTTTTCGGGTCATTACGTGTGCTATGTGAAGAATATCCAAAACAGGTGGTTCAAGGTTGATGACAGTGTGACTAGAGATACTAGAGCAGAGATGAGATGTGACTACAGACTCCTCCAGGTGTTCGAGAGACCTGGACTCCATCCCAAGACTAACTAA 2682 0.4191 MRVTGDLGFSSLVLLVVCLVVPVIGLVICRRWQISEAKKEEIRRLLVLAAEETARAEREALYVYGTSVSAAPSNQCAVCYFPATARCAQCKSVRYCSFECQTVHWRQGHKLECRPPSTIQRSDDVTSDHSSKLVQQGYAGVYSEKLESESTECKSAFEKPPISDICISPKVSSGKDENIRFESLAEGNITDSISESSSNSFSGFSASTGSTDSSDDSSVCESIISNEYDREGPILVDSTLDILDNTSDNSMGVTMSSSPKFATLVDSTMHKLNHIGPGFSKEGSKFAANGNSGSSKCKGKTIEPSTVFSGFWDKALDGIKDDSKHDTHPSYCDESMGKRTVSDSSCHFSFSAMPPSHVRDTKTKGSDNAFPNCIGSQNNNVNSSEVRNFSFSNSELSSVRSYVNPNGSKSDQLDSKDSFRPPLSSFSHQSPGGKDSICAEALRINNLQKTGSMVSNRVVKNCRSTFKSTEIRCVKHEDANSNLASGNEEHSHSSTKHGNNDIEFGTRSVTSSHITSCSANSKCGLRTPVLKVVDQFRGSNMSKHFQLAVGSDISERHNDKGFFPYELFVKLYNSNKEELCPFGLVNCGNSCYANAILQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFERLILKSKETKSSVSPISIISHLQNIGSQLSNGREEDAHEFLRHVIDTMQSICLMEAGVNAPGSLEEDTTLMGQTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGDISTLVEALQRFTSPETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDVMNSAFSGHYVCYVKNIQNRWFKVDDSVTRDTRAEMRCDYRLLQVFERPGLHPKTN 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01058 893 SUPERFAMILY Cysteine proteinases 581 868 IPR038765 -
Spst9g01058 893 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 412 866 - -
Spst9g01058 893 FunFam Ubiquitin carboxyl-terminal hydrolase 15 67 117 - -
Spst9g01058 893 Pfam Ubiquitin carboxyl-terminal hydrolase 582 870 IPR001394 GO:0004843|GO:0016579
Spst9g01058 893 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Spst9g01058 893 MobiDBLite consensus disorder prediction 481 501 - -
Spst9g01058 893 MobiDBLite consensus disorder prediction 356 377 - -
Spst9g01058 893 SUPERFAMILY HIT/MYND zinc finger-like 73 115 - -
Spst9g01058 893 MobiDBLite consensus disorder prediction 402 432 - -
Spst9g01058 893 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 583 598 IPR018200 GO:0004843|GO:0006511
Spst9g01058 893 Gene3D - 64 117 - -
Spst9g01058 893 FunFam Ubiquitin carboxyl-terminal hydrolase 15 576 886 - -
Spst9g01058 893 Coils Coil 39 59 - -
Spst9g01058 893 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Spst9g01058 893 MobiDBLite consensus disorder prediction 192 218 - -
Spst9g01058 893 MobiDBLite consensus disorder prediction 402 433 - -
Spst9g01058 893 Pfam MYND finger 76 113 IPR002893 -
Spst9g01058 893 Gene3D Cysteine proteinases 570 879 - -
Spst9g01058 893 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 582 886 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01058 Spst-Chr9 9416552 9422537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01058 562 864 Miscellaneous Gene Families AT4G31670 50.980 4.82e-109 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01058 K11855 - gmx:100795674 1338.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01058 9 9416552 9422537 Spst9g01058 9 9416552 9422537 ECH