Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01047 ATGGATTTAGTTGCACCACCCGAACAATTTTGTTCATCTCCCCACTTCCACATAATCAGAGCTAGGGTTTCGGATAGCACCGTTTCGCGTCCTTTCATTCTATCTTCTGATACTGTTACTCACTTTACAAAATTGAAAGCGACTAGGTCTAGAAAGCGTTCAGACAATCGCGTTTTCGCAGTCTCCAAGTCCGAAACTTCTGGTTTGAACGGCAGACTGCAGCAAATTGTGAGCACCCCAAACGGGGACGTGAATGGCATAGCAACCGAATCTTCGGCAAACGGGGTGAACTGTTCCCGGAACTACGAGGAGTTTGCGAGCAATGTTCATCTCCGGAAGTTGATTAGAAACGGGGAATTGGAGGAAGGGCTGAAGTTTCTGGAGCGCATGATTTACCAAGGGGATATCCCTGATGTCATTGCTTGCACCAGCTTAATTCGAGGGTTTTGCAAGGGTGGGAAGACTAAGAAAGCAACGAGAGTCATGGAAATTTTGGAGAATTCTGGAGCTGTTCCTGATGTCATAACTTACAATGTTTTGATTGGTGGTTATTGCAAATCAGGGGAGATAGATAAAGCCTTGCAGGTTTTGGAAAGAATGAGTGTCGCTCCTGATGTTGTTACGTATAACACGATTTTGCGTAGTTTGTGTGGCAGTGGGAAATTGAAGGAGGCAATGGAGGTTCTTGACAGGCAGCTGCAGAGGGAGTGTTATCCTGATGTGATTACTTACACGATTTTGATTGAAGCTACTTGCAATGAAAGTGGCGTTGGTCAAGCGATGAAACTGTTGGATGAGATGAGGAATAAAGGATGTAAACCTGATGTGGTCACTTACAATGTTCTTATCAATGGTATTTGCAAGGAGGGTAGGTTGGATGAGGCTATTAAGTTTTTGAATAACATGTCTTCGTATGGTTGTCAACCGAATGTGATCACTCATAATATTATTCTGCGTAGCATGTGTAGTACTGGGAGATGGATGGATGCTGAGAGGCTGTTAGCTGATATGCTGAGGAAGGGTTGTTCCCCTAGTGTTGTTACTTTCAATATCTTGATCAACTTTTTGTGCCGGAAACGGTTACTGGGGAGAGCCATTGATGTCTTGGAGAAAATGCCAAAGCATGGATGTGTACCAAATTCCTTGAGTTACAATCCATTGCTTCATGGGTTTTGTCAAGAGAAAAAGATGGATAGAGCGATTGAGTATTTGGAAATAATGGTGTCAAGGGGTTGTTACCCGGATATAGTGACCTATAACACTTTGCTTACAGCACTATGCAAAGACGGGAAGGTGGAAGCTGCAATTGAAATACTGAATCAACTGAGTAGCAAGGGATGCTCTCCTGTTTTGGTTACGTATAATACAGTTATTGATGGTCTTGCAAAGGTGGGAAAAACAGAGTCTGCTGTGGAACTCTTAGAAGAGATGCGTAGAAAGGGTCTTAAACCTGATACAATTACGTACTCGTCACTGCTTCGGGGACTTGGTCGTGAAGGAAAGGTTGATAAGGCTATCAAAATTTTCCATGACATGGAAGGATTAAGTATTAAGCCCAATGCTATCACTTACAATTCAATCATGTCCGGACTTTGTAAGGCTCGGCAAACTAGTCGTGCTATTGATTTTCTGGCATATATGGTAGAGCAAGGATGCAGACCTACCGAAGCAACATATACCATTCTTATAGAAGGTATTGCTGATGAAGGATTAGCTGAGGAAGCTTTGGAGTTGTTGAACGAGTTGTGTTCCAGAGGATTTGTGAAGAAAAGTTCAGCTGCACATGTAGCAGTCAAGATGTAG 1803 0.4304 MDLVAPPEQFCSSPHFHIIRARVSDSTVSRPFILSSDTVTHFTKLKATRSRKRSDNRVFAVSKSETSGLNGRLQQIVSTPNGDVNGIATESSANGVNCSRNYEEFASNVHLRKLIRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCKGGKTKKATRVMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCGSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNESGVGQAMKLLDEMRNKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMSSYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVEAAIEILNQLSSKGCSPVLVTYNTVIDGLAKVGKTESAVELLEEMRRKGLKPDTITYSSLLRGLGREGKVDKAIKIFHDMEGLSIKPNAITYNSIMSGLCKARQTSRAIDFLAYMVEQGCRPTEATYTILIEGIADEGLAEEALELLNELCSRGFVKKSSAAHVAVKM 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01047 600 NCBIfam pentatricopeptide repeat 175 201 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 487 521 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 347 381 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 452 486 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 522 556 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 417 449 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 141 174 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 558 588 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 277 311 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 207 241 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 312 346 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 242 276 IPR002885 -
Spst9g01047 600 NCBIfam pentatricopeptide repeat 383 416 IPR002885 -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Spst9g01047 600 Pfam PPR repeat family 379 428 IPR002885 -
Spst9g01047 600 Pfam PPR repeat family 451 497 IPR002885 -
Spst9g01047 600 Pfam PPR repeat family 204 253 IPR002885 -
Spst9g01047 600 Pfam PPR repeat family 519 567 IPR002885 -
Spst9g01047 600 Pfam PPR repeat family 274 323 IPR002885 -
Spst9g01047 600 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 112 372 - -
Spst9g01047 600 FunFam Pentatricopeptide repeat-containing protein At1g09900 233 303 - -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Spst9g01047 600 FunFam Pentatricopeptide repeat-containing protein At1g09900 375 465 - -
Spst9g01047 600 SUPERFAMILY HCP-like 173 483 - -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Spst9g01047 600 Gene3D Tetratricopeptide repeat domain 89 233 IPR011990 GO:0005515
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Spst9g01047 600 FunFam Pentatricopeptide repeat-containing protein At1g09900 75 230 - -
Spst9g01047 600 FunFam Pentatricopeptide repeat-containing protein At1g09900 304 373 - -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Spst9g01047 600 Pfam PPR repeat 169 201 IPR002885 -
Spst9g01047 600 Pfam PPR repeat 340 372 IPR002885 -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Spst9g01047 600 Gene3D Tetratricopeptide repeat domain 304 372 IPR011990 GO:0005515
Spst9g01047 600 Gene3D Tetratricopeptide repeat domain 514 584 IPR011990 GO:0005515
Spst9g01047 600 Gene3D Tetratricopeptide repeat domain 373 443 IPR011990 GO:0005515
Spst9g01047 600 Gene3D Tetratricopeptide repeat domain 234 303 IPR011990 GO:0005515
Spst9g01047 600 Gene3D Tetratricopeptide repeat domain 444 513 IPR011990 GO:0005515
Spst9g01047 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01047 Spst-Chr9 9351588 9353390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g01047 102 599 Glycosyltransferase AT1G05670 30.572 3.01e-77 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01047 - - gmx:100791459 1059.67