Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g01011 ATGGCGTCTTCTAAGAGGCCAAATGCAGAGCCGAATGGGAAAGGGAAACGCCACAAATCTTCCGGAGGTTTTTCGACGTTGGATGTTTCTCCGGGGAGTGCCGTGTTTCGTTTGCTCTGTCCCGTTTCAAGAATCGGCAGTGTTATTGGCAAAGGCGGTGCCATCATTTCACAAATTCGACTAGAAACTGGTGTGAAGGTTAAGATTGAGGAAGCTATACCTGGGTGTGATGAAAGGGTTATCACTATCTCAGGTTCTGATAAAGAGGCTGAAGAAGATCCTGCTGAGCAGGGAAAGGAGGTTAACAATGATGATACTGGAATCGTTGGGAAGGAGGATGAGGAGGAGAAGGAAGGTGATGTTGATGAAAAAGAAGAGAAAGAAGATAAAAATTCTGTTCCCGCTGAAGATTCTCATAGTGAGAAGGGGAATTCGGCTATTCGGAAGGCTATATCACTAGTTTTTGAGAGAATGGTTGAGGGAGTGGAGGAGACAAGCGAAGAGGATGAAGAAAGTAATAAATCTTCTTCCCTTGTTTTTAGGTTACTTATTCTTACTACTCAAGTTGGATGCCTTTTAGGAAAGGGTGGTAGTGTGATTAAGAGAATGGCAGCCGAGAGTGGGGCACATATTCGGATCCTTCCTAAAGACAAACTTCCAGTCTGTGCATCAGCTTCTGATGAGATAGTTCAGATCTCAGGAGGAGTAGAAGTTGTTAGGAAAGCTCTTCAATCAGTTTCTCATCAGCTATTGGAAAACCCGCCACGGGATCATGAATTGTCCGCAAATTTTAATGGGCCATCTCATTCATCTGGGCAATTCCCATCACACAGCCGATCCTTTGGTGGTCAAGGAGTACCTTTTGCTGCCGGGCATGATATTTCTGTTTTTCATTCTGCCCCTCAATTGATTTCCAAGTTTCATGAAGCTGCCATTCACGGTCGTACAAGGCCTCTACAGGAAATGCTTACTTTTCGTTTATTGTGTCCTGCGGAAAGAGTAGGAAATGTAATTGGTAAAGGTGGATCAATCATAAAGACACTGCAGCAAGAGACAGCAAGTGAAATCAAGATTGTAGAAAGCCCCCCAGATTCAGAGGACTGTGTTATTATTGTATCTGGTCCAGCGCACCCAGACGATAGAGTATCCCCTGTGCAAGAGGCTGTATTTCGTGTGCAAACTAGAATAGCCAAGCCTATACCTGATTCTAAAGAGCATACTATGTTAGCAAGGTTTCTTGTTTCTTCCAATCAAATAGGTTGCCTCCTCGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGAAATCAGGGGCCCATATCCGCATATTAGGAAAGGATAAGGTTCCAAAATGTGCTTCAGAAGATGAAGAAGTAATTCAGGTAAATGGAGAAATTGAGGCAGTGCATGACGCCCTTATGCAAATAACCACTAGATTAAAACATCATTTTTTTCGTGATTCCCATCCATCTGTCAATTATCCTTCAAATTCTCCATTTGTGGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGGCGGGGACTGTCACCACCTGGGTTGTATTCTGACCTAGGCCCTCCACTTCCCCATGCGGGTTTTCCTCTTGATGATCGCCCTCCCTTTTTGACTAATATACATAGACCAGGCATTCCTCCTCACATATCTGAAAGGAAACCTTGGGGTCCTCAGGGGGTACTTGAAGGTGGTTCACGCATTGGCTTGCCAGACTTTCCAGGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGGGGGAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCACTGGTGCCTGTAATATATGGAGAAGATGGTGAATGCCTGAAACAAATACTACAGATCTCTGATGCAAATATTACTATAACTGATCCAAAGCCTGGAGCCGTGGAAACTAAAATTATAATATCTGGAACCCCAGAGCAAACTCATGCAGCCCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCTGGTTGA 2025 0.4425 MASSKRPNAEPNGKGKRHKSSGGFSTLDVSPGSAVFRLLCPVSRIGSVIGKGGAIISQIRLETGVKVKIEEAIPGCDERVITISGSDKEAEEDPAEQGKEVNNDDTGIVGKEDEEEKEGDVDEKEEKEDKNSVPAEDSHSEKGNSAIRKAISLVFERMVEGVEETSEEDEESNKSSSLVFRLLILTTQVGCLLGKGGSVIKRMAAESGAHIRILPKDKLPVCASASDEIVQISGGVEVVRKALQSVSHQLLENPPRDHELSANFNGPSHSSGQFPSHSRSFGGQGVPFAAGHDISVFHSAPQLISKFHEAAIHGRTRPLQEMLTFRLLCPAERVGNVIGKGGSIIKTLQQETASEIKIVESPPDSEDCVIIVSGPAHPDDRVSPVQEAVFRVQTRIAKPIPDSKEHTMLARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHDALMQITTRLKHHFFRDSHPSVNYPSNSPFVDQLPPFPPYLGRRGLSPPGLYSDLGPPLPHAGFPLDDRPPFLTNIHRPGIPPHISERKPWGPQGVLEGGSRIGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESG 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g01011 674 MobiDBLite consensus disorder prediction 263 280 - -
Spst9g01011 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 321 407 IPR036612 GO:0003723
Spst9g01011 674 CDD KH-I_PEPPER_rpt2_like 179 247 - -
Spst9g01011 674 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 319 663 - -
Spst9g01011 674 MobiDBLite consensus disorder prediction 80 144 - -
Spst9g01011 674 ProSiteProfiles Type-1 KH domain profile. 33 102 - -
Spst9g01011 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 29 88 IPR036612 GO:0003723
Spst9g01011 674 Gene3D K Homology domain, type 1 33 93 IPR036612 GO:0003723
Spst9g01011 674 Gene3D K Homology domain, type 1 319 399 IPR036612 GO:0003723
Spst9g01011 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 400 485 IPR036612 GO:0003723
Spst9g01011 674 CDD KH-I_PEPPER_rpt1_like 323 390 - -
Spst9g01011 674 Pfam KH domain 36 90 IPR004088 GO:0003723
Spst9g01011 674 Pfam KH domain 411 476 IPR004088 GO:0003723
Spst9g01011 674 Pfam KH domain 181 246 IPR004088 GO:0003723
Spst9g01011 674 Pfam KH domain 324 376 IPR004088 GO:0003723
Spst9g01011 674 Pfam KH domain 601 664 IPR004088 GO:0003723
Spst9g01011 674 CDD KH-I_PEPPER_rpt2_like 409 480 - -
Spst9g01011 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 599 668 IPR036612 GO:0003723
Spst9g01011 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 168 257 IPR036612 GO:0003723
Spst9g01011 674 CDD KH-I_PEPPER_rpt1_like 35 95 - -
Spst9g01011 674 Gene3D K Homology domain, type 1 598 671 IPR036612 GO:0003723
Spst9g01011 674 MobiDBLite consensus disorder prediction 252 282 - -
Spst9g01011 674 Gene3D K Homology domain, type 1 174 254 IPR036612 GO:0003723
Spst9g01011 674 Gene3D K Homology domain, type 1 405 483 IPR036612 GO:0003723
Spst9g01011 674 ProSiteProfiles Type-1 KH domain profile. 322 389 - -
Spst9g01011 674 ProSiteProfiles Type-1 KH domain profile. 599 663 - -
Spst9g01011 674 SMART kh_6 176 251 IPR004087 GO:0003676
Spst9g01011 674 SMART kh_6 406 481 IPR004087 GO:0003676
Spst9g01011 674 SMART kh_6 598 668 IPR004087 GO:0003676
Spst9g01011 674 SMART kh_6 32 102 IPR004087 GO:0003676
Spst9g01011 674 SMART kh_6 321 397 IPR004087 GO:0003676
Spst9g01011 674 MobiDBLite consensus disorder prediction 82 114 - -
Spst9g01011 674 MobiDBLite consensus disorder prediction 1 25 - -
Spst9g01011 674 ProSiteProfiles Type-1 KH domain profile. 177 246 - -
Spst9g01011 674 ProSiteProfiles Type-1 KH domain profile. 407 476 - -
Spst9g01011 674 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g01011 Spst-Chr9 9026538 9030902 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g01011 K21444 - gmx:100777433 1109.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g01011 9 9026538 9030902 Spst9g01011 9 9026538 9030902 ECH