Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00996 ATGGCGGTTTCCGATAGTCCCAGCGGTGGCTCCACGCCGCCTCAACAGGAACAAGCCAACAAGTACGGTTTCACCAAGCCTCTCTCCCTTGCGGGTCCCACCGACGCTGATCTCCAACGTAACAACGAATTAGAGAAGTTCTTGCTCGAATCGGGGCTCTACGAGAGCAATGATGAATCCGCGGCGAGGAAAGAGGTTCTCCACCGCCTCGATCAGATTGTGAAAAGCTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTTGAGGATGCAAACGCTGTCATTTTCACTTTTGGTTCTTACCGGCTAGGGGTTCATGGACCTGGAGTTGATATTGACACTTTGTGCATTGGTCCTTCTTATGTGAATCGAGAGGAAGATTTCTTCATCATTTTGCATAACATTTTAGCTGAAATGGAAGAAGTTTCCGAACTTCAACCAGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCCAGTATATCAATTTTGGTTGTGCCAGAAGACCTAGATATCTCACATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGGGTGGCAGATCAAATTCTTAAACTTGTTCCAAATATTGAGCACTTCCGAACTACACTGAGATGCTTAAAGTTTTGGGCTAAAAGACGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATATGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCTCGATTCTTCAGGGTCTATACGCAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTTGGGTTCCCTATATGGGATCCTCGTAGAAATCCACGAGATAGATTTCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGCTACAATGTCTCAGCAAGCACCCTACGTGTTATGATGGAACAGTTTCGCTATGGCAATAAGATTTGTGATGAAATTGACCTTAATAAAGCCCAGTGGAGCGCACTTTTTCAGCCTTACATGTTTTTTGAAGCATACAAAAACTATTTACAAGTGGACATAATTGCATCAGACACTGATGATTTACTAGCGTGGAAGGGCTGGGTAGAATCTCGGTTGAGGCTGCTTACCCTGAAGATAGAACGAGATACAAATGGGATGCTGCAGTGCCATCCTTACCCGCATGAGTATATAGACACATCCAAGCCTTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATACGTGGAACGGTTGATGAGTTCAGACAAGAAATAAATATGTATATCTACTGGAAGCCAGGGATGGAAATTTTTGTTTCTCATGTTCGTCGAAAGCAGCTCCCTGCATTTGTTTTTCCTGATGGTTACAAACGCACTAGAATGCCAAGGCACATTAGCCATACAACTGAAAAAACAGGTGACGATGCTACAAAGTGCTACTCTGGGTCTGGGCCATCTGAAAGATGCATCAAGAGGAAAAGTTACCCTGAAATGGTGGATAAGAAGCCAGACAAACCAGATAAACGGGCATCTATTAGCCCACAGAGGTTAGAATGCGTTTCTCCTGAAAGTTGTACTAGTAAATCAGGTGGTACAACTCAAATGAGTATTGATAGTATTGAAGGGGTTTGTTTAGCTGGTTCAAAAACCAACGTTGCTAACAGCAATTGTGAAATTAAGTCATCTGATGTACTCCCAGGAAGTGGACTAAGCACTGAGGTAGCTGACATGCAGATTAGTGAACCAGGTTTTGTTGACGCCACACATGATATGTTGAAATCTAGGAGTGTAGAAATTCCAAATGAGAATGGAGTTGTCAATGGGGACAAAGCTCAGAATCTGGCTTTAGATTGCTTGGAAAGTGCAGAAACTGAATCTACTAATAGCTTGTCAAACTGTAAAGAGGATGTCGTTGATATGGATAGGCAACTAGACAAAGCATGTAATTTCGTCACAAGGGATGAATGCTCAGATTATGTACCGAATGCCAGGCCCCGGAACCTCAATTGCGAGGTGAGTTATTTCGTTCGAGGACTTTTTGGATTAGGAACTGTTGTGGATGGCAGTGAAAAAAACTGGAAGTCTGGGAGATAG 2223 0.4332 MAVSDSPSGGSTPPQQEQANKYGFTKPLSLAGPTDADLQRNNELEKFLLESGLYESNDESAARKEVLHRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISILVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIDLNKAQWSALFQPYMFFEAYKNYLQVDIIASDTDDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYIYWKPGMEIFVSHVRRKQLPAFVFPDGYKRTRMPRHISHTTEKTGDDATKCYSGSGPSERCIKRKSYPEMVDKKPDKPDKRASISPQRLECVSPESCTSKSGGTTQMSIDSIEGVCLAGSKTNVANSNCEIKSSDVLPGSGLSTEVADMQISEPGFVDATHDMLKSRSVEIPNENGVVNGDKAQNLALDCLESAETESTNSLSNCKEDVVDMDRQLDKACNFVTRDECSDYVPNARPRNLNCEVSYFVRGLFGLGTVVDGSEKNWKSGR 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00996 740 CDD NT_PAP_TUTase 62 217 - -
Spst9g00996 740 Pfam Poly(A) polymerase central domain 23 366 IPR007012 GO:0043631|GO:1990817
Spst9g00996 740 SUPERFAMILY PAP/OAS1 substrate-binding domain 218 367 - -
Spst9g00996 740 FunFam Putative poly(A) polymerase gamma 197 365 - -
Spst9g00996 740 PANTHER POLY A POLYMERASE 12 550 - -
Spst9g00996 740 Gene3D - 23 365 - -
Spst9g00996 740 Gene3D Poly(A) polymerase predicted RNA binding domain 369 485 - -
Spst9g00996 740 Pfam Nucleotidyltransferase domain 96 172 IPR002934 GO:0016779
Spst9g00996 740 SUPERFAMILY Nucleotidyltransferase 20 216 IPR043519 -
Spst9g00996 740 MobiDBLite consensus disorder prediction 511 530 - -
Spst9g00996 740 MobiDBLite consensus disorder prediction 539 555 - -
Spst9g00996 740 Pfam Poly(A) polymerase predicted RNA binding domain 370 427 IPR007010 GO:0003723|GO:0043631
Spst9g00996 740 Pfam Poly(A) polymerase predicted RNA binding domain 433 502 IPR007010 GO:0003723|GO:0043631
Spst9g00996 740 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 370 496 IPR011068 GO:0003723|GO:0016779|GO:0031123
Spst9g00996 740 Gene3D Beta Polymerase, domain 2 55 211 IPR043519 -
Spst9g00996 740 MobiDBLite consensus disorder prediction 1 36 - -
Spst9g00996 740 FunFam Nuclear poly(A) polymerase 4 369 485 - -
Spst9g00996 740 MobiDBLite consensus disorder prediction 539 559 - -
Spst9g00996 740 MobiDBLite consensus disorder prediction 1 23 - -
Spst9g00996 740 FunFam Poly(A) polymerase alpha, putative 55 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00996 Spst-Chr9 8882822 8887674 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00996 K14376 - gmx:100802620 1356.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00996 9 8882822 8887674 Spst9g00996 9 8882822 8887674 ECH