Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00990 ATGTGCGTTTCACATTTCGCGGTTCTATCGTCGCGGGCTTCAACGCTCCGTTCTCGCATCCGCTGTTGTACTACTCTCACTGCTACTACCACTGAAACTCCCATTCCAACCTCCGTAAAGAAACGAGTAGTGTCGGGGGTTCAGCCCACGGGCTCAATTCATCTTGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAGAATGTGTATGAAACACTTTTCTTCATTGTGGACCTGCATGCGATTACATTACCATATGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCCAAGGCTTCAGTATTTGTACAGTCTCATGTTCGTGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGCGTTGCTCTTTTGACATATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATCTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACTCCCGAGGCAGTGCCAGAGCCCCTTATACCTCCAGCGGGTGCCAGAATAATGTCTCTAACGGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCCAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAAGCTTGGAATTTGACAACTCTGAGAGACCTGAATGTAACAATCTTCTTTCCATATACCAGCTTGTTTCAGGAAAGACAAAAGAGGAAGTTGTTCAGGAATGTCAAAATATGAACTGGGGCATATTCAAAACCCTTTTAACAGATGCCTTGATTGATCATTTACATCCCATTCAGGTTCACTATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGAAGTATTGGCTCAAGGTGCTAGAAATGCGGCAGAAATAGCAGATACCACACTTCATAATGTTTACCAAGCAATGGGCTTTTTGAAGAGACTGTTGATTGAGTAA 1083 0.4284 MCVSHFAVLSSRASTLRSRIRCCTTLTATTTETPIPTSVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYETLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTPEAVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPSLEFDNSERPECNNLLSIYQLVSGKTKEEVVQECQNMNWGIFKTLLTDALIDHLHPIQVHYEEIMSDSGYLDEVLAQGARNAAEIADTTLHNVYQAMGFLKRLLIE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00990 360 PRINTS Tryptophanyl-tRNA synthetase signature 180 201 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst9g00990 360 PRINTS Tryptophanyl-tRNA synthetase signature 103 122 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst9g00990 360 PRINTS Tryptophanyl-tRNA synthetase signature 220 230 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst9g00990 360 PRINTS Tryptophanyl-tRNA synthetase signature 53 69 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst9g00990 360 CDD TrpRS_core 42 305 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst9g00990 360 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 58 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Spst9g00990 360 Gene3D - 213 323 - -
Spst9g00990 360 FunFam Tryptophan--tRNA ligase 211 321 - -
Spst9g00990 360 SUPERFAMILY Nucleotidylyl transferase 41 353 - -
Spst9g00990 360 NCBIfam tryptophan--tRNA ligase 40 353 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Spst9g00990 360 Gene3D HUPs 43 352 IPR014729 -
Spst9g00990 360 Hamap Tryptophan--tRNA ligase [trpS]. 40 354 IPR024109 GO:0004830
Spst9g00990 360 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 15 354 - -
Spst9g00990 360 Pfam tRNA synthetases class I (W and Y) 42 308 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00990 K01867 - gmx:100780447 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00990 9 8801461 8821983 Spst9g00990 9 8801461 8821983 ECH