Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00970 ATGGAAGACGCCGGGAAATCTCTGAAGTCTGGTAACCTATCGCGTAAGGTGGTTGATTTGGCTGCGGGAGAAGCACACGCTCTCATCCTTACTGGGGATGGCAGTGTCTACAGTTGGGGTAGGGGAACGTTAGGACGAATCGGGAATGGCTCAGAAAAGGATGAGTTTTTCCCAGTACAACTCAATTTCGGAAACCCAAATCCAAGTGGAACACAAGACACTGTCAAGATAGTGGGAATTGCTGCTGGTGCTTATCATAGTCTCGCTCTCGCAGATCTGTTATCTTCTCAAAATCGTTGTGTAAAACATCTGCAATGTTATTACCTGCATTTTAAAACTTACCTTACATGCATGCAAGCTACTGTTGCACCAAAGTCTGTTGAATTTATGTCATGTATTAGCATGTACACCCTTGACTACTGTATGGATGGTCAACTTGGTACAAATGGAGAGGAATCACATGACAATGAAAATGCTGTTAGAGACTATTCTTTAGTGCCTCGCTTACTCAACAGGTTTGTTGAATTGCACCCTGCCGATTCTTCATCGGGTGGGTCTGAAGTAGAACGTAAAACATCACTTAAGATATGTGCTGTCAAAGCTGGAGGAATGATGTCTCTGGCTATTGATAACCGTGGGACGCTGTGGATGTGGGGAAACTGCCCACAACAAAGCAAAGAAGGGGAGTTAGCACTTGTAAGCAGTTTCACTCCAACTCCAGTTTGGGATTTTCAGGGTCAATCTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCACTGGTTAGTGCGGGGGAATCATACAATGGTGAAGATCTAGTGTGCTACTCTTGGGGTTATAACACCCGTGGCCAATTAGGCTTGGGGGATAGAGAGAGCAGGCTGCATCCGGAAGTTGTCAATATAATTTATGAGGATTCACCTTATGAGGTAGCATGTGGTGCCTATCACACTGCTTTGCTCACTCGTATAAAGAAAACTAGTGAAACATTACACAGCACATGCTGGACCTTTGGCCTTGGAGATAATGGCCAGCTTGGGCATGGAACAACACAAAGCACATTATTTCCTACACCTATCAAAGAATTGCCACAAAATATATCTCTTATTGCTGTTGACTGTGGTTTGTTTCATACAAGTGTAGTTTCCTCGGCTGGAGATGTGTGGTCATGGGGAATGGAGAAGGGCCTCGGCTTATGCCCTGATGCTAGTCGAGCAGGAACAGATTCCGGTGATGCACTATCTCCCCGTCTTATGCCATGGAAGCCAAATCAACCTAAATTTCCAGATCCAGTTAAACTTGCATGTGGGGCCGCACATACAGTTATAGTTGCGCAAGGGGGATATAGAATGTGGTCTTGGGGTAGGGGGAGAAGTGGAGTTCTAGGAGATGGTAAAGGAGCAGATTGTTACACCCCCACGGTTGTACTATGGCCTCAAATGATGGAGGATTGTGAGGAAGAAGAAGTAAAAAGCAAAGGTGAGCAAGGAAAATCTAGAGAAAAGGAGACTGAAGCAACAGAAGCAGAAGAGAAACTATCCTCTGCGTTGAATGAGCTGAAGCTGCTTAAAATAAAGCTATCTGTGATGGAAAAATATGCCAGTATACTTCATGGTTCTGTTTTTGGAAAACCTTTTGATGAGCAAGGTATCCCTGATTCATTGAGGAATTCAGGTTCATTTGACATTGGAGAAGAATGGGAGAAGATGTTAGGGGCTGCAGATCATAGGAGGCTAATTAGGTTGGAAATGTTTTACCGAGACATGCTTGCTGGAGTAAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTGTAAAGGAGTGTATCCAATCTTCAGAGGTGACAAATTAG 1857 0.4405 MEDAGKSLKSGNLSRKVVDLAAGEAHALILTGDGSVYSWGRGTLGRIGNGSEKDEFFPVQLNFGNPNPSGTQDTVKIVGIAAGAYHSLALADLLSSQNRCVKHLQCYYLHFKTYLTCMQATVAPKSVEFMSCISMYTLDYCMDGQLGTNGEESHDNENAVRDYSLVPRLLNRFVELHPADSSSGGSEVERKTSLKICAVKAGGMMSLAIDNRGTLWMWGNCPQQSKEGELALVSSFTPTPVWDFQGQSVVKVACGNEHVVALVSAGESYNGEDLVCYSWGYNTRGQLGLGDRESRLHPEVVNIIYEDSPYEVACGAYHTALLTRIKKTSETLHSTCWTFGLGDNGQLGHGTTQSTLFPTPIKELPQNISLIAVDCGLFHTSVVSSAGDVWSWGMEKGLGLCPDASRAGTDSGDALSPRLMPWKPNQPKFPDPVKLACGAAHTVIVAQGGYRMWSWGRGRSGVLGDGKGADCYTPTVVLWPQMMEDCEEEEVKSKGEQGKSREKETEATEAEEKLSSALNELKLLKIKLSVMEKYASILHGSVFGKPFDEQGIPDSLRNSGSFDIGEEWEKMLGAADHRRLIRLEMFYRDMLAGVKDELMKRRIKEIVKECIQSSEVTN 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00970 618 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 93 IPR000408 -
Spst9g00970 618 PRINTS Chromosome condensation regulator RCC1 signature 329 350 IPR000408 -
Spst9g00970 618 PRINTS Chromosome condensation regulator RCC1 signature 17 30 IPR000408 -
Spst9g00970 618 PRINTS Chromosome condensation regulator RCC1 signature 135 149 IPR000408 -
Spst9g00970 618 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Spst9g00970 618 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 312 322 IPR000408 -
Spst9g00970 618 SUPERFAMILY RCC1/BLIP-II 14 91 IPR009091 -
Spst9g00970 618 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 387 448 IPR000408 -
Spst9g00970 618 SUPERFAMILY RCC1/BLIP-II 129 480 IPR009091 -
Spst9g00970 618 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 386 IPR000408 -
Spst9g00970 618 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 213 265 IPR000408 -
Spst9g00970 618 Coils Coil 500 527 - -
Spst9g00970 618 MobiDBLite consensus disorder prediction 487 511 - -
Spst9g00970 618 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 325 IPR000408 -
Spst9g00970 618 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 101 - -
Spst9g00970 618 Pfam Regulator of chromosome condensation (RCC1) repeat 277 322 IPR000408 -
Spst9g00970 618 Pfam Regulator of chromosome condensation (RCC1) repeat 336 382 IPR000408 -
Spst9g00970 618 Pfam Regulator of chromosome condensation (RCC1) repeat 387 444 IPR000408 -
Spst9g00970 618 Pfam Regulator of chromosome condensation (RCC1) repeat 33 90 IPR000408 -
Spst9g00970 618 Gene3D - 5 103 IPR009091 -
Spst9g00970 618 Gene3D - 119 514 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00970 Spst-Chr9 8609997 8613751 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00970 - - gmx:100815199 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00970 9 8609997 8613751 Spst9g00970 9 8609997 8613751 ECH