Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00957 ATGGATTTCTATGGCAAGACGACTCTCCTCAGCCTCATGGACACCGAAAAGCCAGAACCACCACGATCCCCTCTTCATCTTCATCTCCAGAACCACAGAGAGATAAGCGAACAAGACCTTCAGTTCAGTCCCCCCGGGCCTTCATCTGATGGCATGTTCCCTATCATGCCAGATTCACCATGGACGCTTTCCCCTCTCCCAACCCCTTCACCTTCTTTGCTTTACCACTGCATCGCTTCGCTCCACCGCCACGAAGGTAACATCTACGCAATTGCAGCTTCAAAGGGTTTGGTCTTCACCGGCTCCAACAGCAGCAGAATCCGTGTGTGGAAGCAGCCAGATTGCATGGACAGAGGCTACCTCAAAGCAAGCTCCGGTGAGGTGAGAGCCATTCTCGCTTATAGCAACATGCTTTTCTCCACGCACAAGGACCACAAGATAAGGATATGGACCTTCACCGTTTCAGATAGCTTCAAGTCCAAGAAACTGGGAACTCTTCCAAGAAAAACCTCGATCCTCATGTTCCCCTCGAGAGGGAAGAACACGCCGAAGCACAAAGATTCGGTGTCTTGCATGGCGTATTACCACTCCGAGGGCCTCTTGTACACCGGCTCCCACGACAGAACAGTGAAGGCGTGGCGTGTTTCCGACAGAAAATGCGTTGACTCGTTCGTTGCGCACGAGGATAACGTGAACGCCATATTGGTGAACCAAGACGATGGTTGTCTTTTCACCGGTTCCTCGGACGGGTCGGTGAAGATATGGAGAAGGGTGTACACTGAAGACTCGCACACTCTCACCATGACTCTCAAATTCCAACCCTCCCCCGTCAATGCTCTTGCATTGAGCTGCTCGTTCAACCACTGCTTTCTCTATTCGGGGTCCTCCGATGGGATGATAAACTTCTGGGAGAAGGAAAGGTTGTGCTACAGGTTCAACCACGGAGGGTTCTTGCAGGGGCACCGTTTCGCGGTTCTTTGTTTAGCCACAGTAGGGAACATGATATTCAGTGGGTCAGAAGACACCACAATAAGGGTATGGAGGAGAGAGGAAGGTAGTTGCTACCACGAGTGTTTGACGGTTTTGGATGGACACAGAGGACCAGTGAGATGCTTGGCTGCATGCCTCGAGATGGAAAAGGTTGTCATGGGATTCTTGGTGTATAGTGCTAGTTTGGACCAAACATTCAAGGTGTGGAGGATTAAGGTTTTGCCGGATGAAAAAATGTGCATGGACTACAGTGAACACTGTGAAGCCACAAGGGTGAAGATTAGGGACTACGATATGAGCCCGGTTTTGTCACCTTCCTGGGTCGAGAAGAAGCTTCAAGGTAGTTATTTTCAGTAG 1347 0.5048 MDFYGKTTLLSLMDTEKPEPPRSPLHLHLQNHREISEQDLQFSPPGPSSDGMFPIMPDSPWTLSPLPTPSPSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDSFKSKKLGTLPRKTSILMFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFVAHEDNVNAILVNQDDGCLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCMDYSEHCEATRVKIRDYDMSPVLSPSWVEKKLQGSYFQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00957 448 CDD WD40 77 400 - -
Spst9g00957 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Spst9g00957 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 357 IPR001680 GO:0005515
Spst9g00957 448 Pfam WD domain, G-beta repeat 185 213 IPR001680 GO:0005515
Spst9g00957 448 Pfam WD domain, G-beta repeat 268 303 IPR001680 GO:0005515
Spst9g00957 448 Pfam WD domain, G-beta repeat 357 399 IPR001680 GO:0005515
Spst9g00957 448 Pfam WD domain, G-beta repeat 317 347 IPR001680 GO:0005515
Spst9g00957 448 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Spst9g00957 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 347 - -
Spst9g00957 448 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Spst9g00957 448 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Spst9g00957 448 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Spst9g00957 448 SMART WD40_4 311 348 IPR001680 GO:0005515
Spst9g00957 448 SMART WD40_4 217 256 IPR001680 GO:0005515
Spst9g00957 448 SMART WD40_4 74 111 IPR001680 GO:0005515
Spst9g00957 448 SMART WD40_4 114 151 IPR001680 GO:0005515
Spst9g00957 448 SMART WD40_4 176 214 IPR001680 GO:0005515
Spst9g00957 448 SMART WD40_4 263 304 IPR001680 GO:0005515
Spst9g00957 448 SMART WD40_4 355 400 IPR001680 GO:0005515
Spst9g00957 448 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 58 403 IPR045182 -
Spst9g00957 448 Gene3D - 170 426 IPR015943 GO:0005515
Spst9g00957 448 Gene3D - 68 165 IPR015943 GO:0005515
Spst9g00957 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 255 - -
Spst9g00957 448 SUPERFAMILY WD40 repeat-like 76 402 IPR036322 GO:0005515
Spst9g00957 448 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 255 IPR001680 GO:0005515
Spst9g00957 448 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00957 Spst-Chr9 8464500 8465846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00957 185 404 Miscellaneous Gene Families AT5G08390 23.789 8.69e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00957 - - gsj:114414206 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00957 9 8464500 8465846 Spst9g00957 9 8464500 8465846 ECH