Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00940 ATGCAGGCATCGAGGGCAAGGTTGTTCAAGGAGTACAAAGAGGTGCAGCGAGAAAAGGCTGTTGATCCTGATATTCAACTAGTCTGTGATGAATCTAACATTTTTAAATGGACGGCTCTTGTCAAGGGTCCCTCCGAGACTCCATACGAAGGTGGTGTTTTCCAGCTTGCTTTTTCTGTTCCAGAGCAGTATCCTCTACAGCCGCCGCAAGTCCGGTTTTTGACTAAAATATTTCATCCAAACGTTCACTTTAAGACTGGGGAGATTTGTCTAGATATCTTGAAAAACGCTTGGAGCCCAGCTTGGACACTTCAATCTGTCTGCAGGGCTATAATTGCTTTGATGGCCCATCCAGAGCCTGACAGCCCTCTAAACTGTGATTCAGGCAATCTTCTGCGTTCAGGTGACGTTAGAGGCTACCAATCCATGGCAAGAATGTACACAAGACTTGCAGCAATGTCAAAGAAAGGCTGA 474 0.4599 MQASRARLFKEYKEVQREKAVDPDIQLVCDESNIFKWTALVKGPSETPYEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMSKKG 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00940 157 CDD UBCc 7 148 IPR000608 -
Spst9g00940 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 134 - -
Spst9g00940 157 SMART ubc_7 6 153 - -
Spst9g00940 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Spst9g00940 157 Gene3D Ubiquitin Conjugating Enzyme 1 153 IPR016135 -
Spst9g00940 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Spst9g00940 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Spst9g00940 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Spst9g00940 157 FunFam protein PEROXIN-4 isoform X1 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00940 Spst-Chr9 8301889 8304545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00940 7 123 Miscellaneous Gene Families AT3G17000 34.711 1.52e-16 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00940 K10689 - tcc:18587943 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00940 9 8301889 8304545 Spst9g00940 9 8301889 8304545 ECH