Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00939 ATGGGGAATCCCTTGGTTGAACGTGCCACGACCAGCATGCTCGTGGGCCCTGATTGGGCTTTGAACATGGAGATCTGTGACATACTCAATCGTGACCCTGGCTGTAACAGCTGTGGAACAGAGAATTTTGAAATAAGAAATTTCAAGTACGAGCCAGAGTTGCCAGTTCCTTTTTACTGGAACATTTCAAGCCTTCTAGGAGTTAATACTATTCTGTTTGTGCCCATTAGAACGGGGTATACCAATTTTGCCCTTGATGGCGAGTGGCTTCAAGTGGGTTGGACACGGCAGAGAATAGCGATGGGGCCACCTAGAGGTTCTTATAAGCATGACTTATGTGGCAGAAAAAAAGGTATATGGGCCTTATTGAATGGGGAAATGCATCATAAATGCGACTGTGCCTTCCCTTGTACCATGTGCTGGAATGGAATGAATGCTCTACATTATCAGTTGGAAGATGTTTGCTTGGGCCAACTGGAGGCCGGGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGCTTGGAAGTAAAGTTCCTAGAGTTCAAATTCTTGCACTGACGCTGCTGGAGACAATCATAAAGAATTGTGGGGACATTATCCACATGCATGTTGCTGAGAGAGATGTTCTTCATGATATGGTGAAAATAGCGAAGAAGAGGCCCGATTATCATGTCCGAGAGAAGATATTGGCTCTTATAGATACTTGGCAAGAGGCTTTTGGAGGGCCAAGAGCAAGATATCCACAGTATTATGCAGCATATCAGGAGCTTTTGCGTGCTGGGGCAGTATTCCCTCAGAGGTCTGAGCATTCTGCACCTATATTCACGCCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGATACTGTTGTTCGGCAAGACACAGCTGAGTCCTCAGCAGAGTCTGAGTTTCCTGCCCTAAGTTTGTCAGAAATTCAGAATGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGTCTTCAGCAGGAAGTTATTGTTGATTTGGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAATTCAACTTCGGATGAGTCACTGCTATGCCAAGGCCTATCTCTGAATGATGATCTTCAGCGTGTCTTGGCCAAGCACGAATCCATTGCTTCAGGAACTTCTGCTTCAGGGCCTTCTGCTCAAAATCATACTGAGAATCTGAAGCCTGCACCTACTGGGGCACTTGTTGATTTTGATGGTCCTTTAGTTGATATTGGAGATACTAGTAAACAAACAGATGGAAGGTCGTCTGCTAGTACTGAAACTGGGTCTCAAACATTTAATCAGTTAGTGCTTCCTGCGCCCCCAACATCAAATGGATCAGCTCCCCCTGCAAAGGTTGATTCTAAAGTGGACCTGCTCAGTGGTGATGACTATCACTCACCAAAAGCAGAGACATCACTTGCTCTCGTCCCCATAGGAGAACAGCAGCCAGCCAGCCCTATGTCTCAACAGAATGCCCTTGTTCTTTTCGATATGTTTTCTAATGGAAGCAATCCACCTACTTCTGTTAATACCCAGCCAATTAATGTTGGCAGCCAAACGGGTCCGTTTTCTCCTCCATTTCAACAGCAGCAGACTTTCATATCTCAAGGGGTGTTTTACCCCAATGGAGGTGTGCCAAATGTTGGGTCACCTCGGTATGAGCAATCACCTTATATGCAGAGCACAGGTCCTTCTTGGAATGGTCAGGTTGCGCAGCAACAACAGCCGCCTTCACCAGTTTATGGTACAACAAGTGGCGGATCATTTCCACCACCTCCCTGGGAAGCTCAACCTATAGACAATGAAAGTCCAGTTGCAGGCAGTCAATTCCCACAACCACTGCAAGTCACTCAAGTGGTTATGACGCATATACAAAGTCCTGCACATCCTCAGGGATCTCAAGCAGTGGGGCATGACCAGGCTGTTGGAATATATATGCAGCCAAATGCTAGCCATATGTCAACTATCAACAGCAATGTTCAAAGTAATCAGTTAGGCCTGTATCCGCAGCGTATTCAGGGTGTTAACAGTCCCTATATGGGTATGGCTTCACATCCAATGCATAATAGTCCTGTCGCTTACATGTATCCTCAACAGATGTATGGCAACAAATTCGTAGGATATGGTTATGGTCAGCAACCAGGGGTTCAATATGTTGAGCAGCAAATGTATGGTTTATCATTGAGAGATGATGGTGCTCTCAGAAATTCTTACCAGGTTTCTTCTGCATCCTATGTGCCATCTGGGAAGCCTACCAAACCAGAAGATAAGTTATTTGGGGACCTTGTTAACTTGGCAAAAGTGAAACCAAAACCAACTCCTGACCGAACTGGCATGTAA 2400 0.4529 MGNPLVERATTSMLVGPDWALNMEICDILNRDPGCNSCGTENFEIRNFKYEPELPVPFYWNISSLLGVNTILFVPIRTGYTNFALDGEWLQVGWTRQRIAMGPPRGSYKHDLCGRKKGIWALLNGEMHHKCDCAFPCTMCWNGMNALHYQLEDVCLGQLEAGQAKDVVKGIKKRLGSKVPRVQILALTLLETIIKNCGDIIHMHVAERDVLHDMVKIAKKRPDYHVREKILALIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEHSAPIFTPLQTQPLSSYPQNIRDTVVRQDTAESSAESEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLAKHESIASGTSASGPSAQNHTENLKPAPTGALVDFDGPLVDIGDTSKQTDGRSSASTETGSQTFNQLVLPAPPTSNGSAPPAKVDSKVDLLSGDDYHSPKAETSLALVPIGEQQPASPMSQQNALVLFDMFSNGSNPPTSVNTQPINVGSQTGPFSPPFQQQQTFISQGVFYPNGGVPNVGSPRYEQSPYMQSTGPSWNGQVAQQQQPPSPVYGTTSGGSFPPPPWEAQPIDNESPVAGSQFPQPLQVTQVVMTHIQSPAHPQGSQAVGHDQAVGIYMQPNASHMSTINSNVQSNQLGLYPQRIQGVNSPYMGMASHPMHNSPVAYMYPQQMYGNKFVGYGYGQQPGVQYVEQQMYGLSLRDDGALRNSYQVSSASYVPSGKPTKPEDKLFGDLVNLAKVKPKPTPDRTGM 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00939 799 CDD GAT_GGA-like_plant 316 394 - -
Spst9g00939 799 CDD VHS 160 260 - -
Spst9g00939 799 SMART VHS_2 2 262 IPR002014 GO:0035091|GO:0043130
Spst9g00939 799 SUPERFAMILY GAT-like domain 270 397 - -
Spst9g00939 799 SUPERFAMILY ENTH/VHS domain 160 266 IPR008942 -
Spst9g00939 799 Gene3D - 308 402 IPR038425 -
Spst9g00939 799 Pfam GAT domain 322 396 IPR004152 GO:0035091|GO:0043130
Spst9g00939 799 MobiDBLite consensus disorder prediction 395 413 - -
Spst9g00939 799 ProSiteProfiles VHS domain profile. 163 266 IPR002014 GO:0035091|GO:0043130
Spst9g00939 799 MobiDBLite consensus disorder prediction 395 472 - -
Spst9g00939 799 Gene3D - 3 276 IPR008942 -
Spst9g00939 799 MobiDBLite consensus disorder prediction 577 629 - -
Spst9g00939 799 ProSiteProfiles GAT domain profile. 308 396 IPR004152 GO:0035091|GO:0043130
Spst9g00939 799 ProSiteProfiles VHS domain profile. 9 33 IPR002014 GO:0035091|GO:0043130
Spst9g00939 799 MobiDBLite consensus disorder prediction 434 461 - -
Spst9g00939 799 SUPERFAMILY ENTH/VHS domain 5 34 IPR008942 -
Spst9g00939 799 MobiDBLite consensus disorder prediction 577 605 - -
Spst9g00939 799 Pfam VHS domain 162 257 IPR002014 GO:0035091|GO:0043130
Spst9g00939 799 FunFam TOM1-like protein 2 310 400 - -
Spst9g00939 799 PANTHER TOM1-LIKE PROTEIN 161 791 IPR044836 GO:0035091|GO:0043130|GO:0043328
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00939 Spst-Chr9 8291803 8299082 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00939 - - gmx:100805762 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00939 9 8291803 8299082 Spst9g00939 9 8291803 8299082 ECH