Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00936 ATGCGCCCACCGGTTATTCTCAAAACTACCTCTATCTCTGTTACTTATTCTTCGCCCTGCGATCGCAGACTCAGCACTCTCGCCAGACACTTCGTTAGCGTTTGCGATCCAATGGCTTCTGAAGATAACATCTCCGCTTCGCCAACCGCTGCTTCTGATTCCGTCTTCAATCACCTCCTTCGTGCACCTGAAGATCCTATCCTCGGGGTGACTGTTGCGTATAACAAAGATCCAAGTCCAGTTAAGCTCAACTTGGGCGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGAAGGTTGAACAGCAACTCATAAATGACTTGTCACGCAACAAGGAATATCTTCCAATTGTTGGGCTTGCTGATTTTAATAAACTAAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCAAGAGAACAGGGTTACCACTGTTCAATGCTTATCTGGAACTGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACCTGCCAACACCAACTTGGGGCAATCATCCCAAGGTTTTCAACTTAGCGGGGTTGTCTGTGGAAACATATCGCTACTATGCTCCAGCAACACGAGGGCTTGACTTTCAAGGATTTCTAGAAGATCTTGGTTCTGCTCCATCGGGATCTATTGTTTTGCTTCATGCATGCGCGCATAATCCCACTGGTGTTGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCCTTCTTTGACAGTGCTTATCAGGGTTTTGCTAGCGGCAGTCTAGATGCAGATGCCCAGCCTGTTCGTTTGTTTGTTGCTGATGGGGGTGAATTGCTGGTAGCACAAAGTTATGCAAAGAATCTGGGTCTTTATGGAGAACGTGTTGGTGCCTTAAGCATTGTGTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGTTGAAACTTGTGATTAGGCCCATGTACTCGAATCCTCCCATTCACGGTGCATCCATTGTGGCGGGCATTCTTAAGGACGGGGATTTGTTCAATGAATGGACTATCGAATTGAAGGCAATGGCTGATCGGATTATCAGTATGCGCCAACAACTTTTTGATGCTTTACGTTCCAGAGAAACACCTGGTGATTGGAGTCACATTATCAAACAGATTGGAATGTTTACTTTCACAGGGTTGAATGCTGAACAAGTTTCCTTCATGACTAATGAGTACCATATATACATGACATCTGATGGGAGGATTAGTATGGCCGGTCTTAGTTCCAAAACAGTCCCACATCTAGCAGATGCGATCCATGCAGCTGTAACCCGCGCTCTCTAA 1371 0.4551 MRPPVILKTTSISVTYSSPCDRRLSTLARHFVSVCDPMASEDNISASPTAASDSVFNHLLRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKVEQQLINDLSRNKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHPKVFNLAGLSVETYRYYAPATRGLDFQGFLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRSKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSNPPIHGASIVAGILKDGDLFNEWTIELKAMADRIISMRQQLFDALRSRETPGDWSHIIKQIGMFTFTGLNAEQVSFMTNEYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTRAL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00936 456 PRINTS Aspartate aminotransferase signature 397 415 IPR000796 GO:0006520|GO:0008483
Spst9g00936 456 PRINTS Aspartate aminotransferase signature 261 273 IPR000796 GO:0006520|GO:0008483
Spst9g00936 456 PRINTS Aspartate aminotransferase signature 230 249 IPR000796 GO:0006520|GO:0008483
Spst9g00936 456 PRINTS Aspartate aminotransferase signature 329 354 IPR000796 GO:0006520|GO:0008483
Spst9g00936 456 FunFam Aspartate aminotransferase 347 448 - -
Spst9g00936 456 Pfam Aminotransferase class I and II 82 448 IPR004839 GO:0009058|GO:0030170
Spst9g00936 456 Gene3D - 115 356 IPR015421 GO:0003824
Spst9g00936 456 PANTHER ASPARTATE AMINOTRANSFERASE 50 454 IPR000796 GO:0006520|GO:0008483
Spst9g00936 456 SUPERFAMILY PLP-dependent transferases 54 454 IPR015424 -
Spst9g00936 456 FunFam Aspartate aminotransferase 115 356 - -
Spst9g00936 456 CDD AAT_like 83 436 - -
Spst9g00936 456 Gene3D Aspartate Aminotransferase, domain 1 61 448 IPR015422 GO:0003824
Spst9g00936 456 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 299 312 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00936 Spst-Chr9 8252956 8257645 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00936 K14454 - gmx:547509 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00936 9 8252956 8257645 Spst9g00936 9 8252956 8257645 ECH