Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00934 ATGGCAACGCAATCATTAGACGAAGAAACAACTAAGAAAGTGATACGACAAGTGGAGTTTTATTTCAGCGATAGCAATCTTCTCACCGATGGTTTTATGAGGAAGAGTATCACTGAAAGCGAAGATGGCATGATTAATTTGGCTCTGATTTGCTCATTTAACCGGATGCGTAAACACCTTAGTTTGGGTGATGTAAAGCCGGATGAAGTCGCCCAAGATGTCGTGAATGCTGTTGCTCAAACTTTGAGAACTTCGGCTTCACTCAAGGTCTCTGAAGATGGGAAAAAAGTTGGTAGAACAACTGAACTTCCAAAGCCAGAAGAGGTTGAACAAGTGGATATAAGAACACTTGCTGTATCACCATTTGAATATGATCTGAAACTTGAAGATGTGGAGAAATTCTTTGGTCAATATGCAAAGGTTAATAGCGTCCGGCTGCCCCATCATGTTGGAGACAAGAAGTTCTTCTGTGGCACTGCCCTTGTTGAGTTCTCATCAGATGAAGAAGTAGAAAAAATTATGAAAGAAAAATTGGTGTACGCCGGGGCTGAGTTAGAATTAAAACCCAAGAAGGACTTTGATGCAGAGAGGGAAAAAGAATTAGAAGATTTTAAGAAATCTCGTCCGGCTGTGGGTTCAAATCACCAGAATAACTCAAATGAAGAAGAAAGCTACCCTAAAGGCTTAATAATTGCCTTCAAACTAAAGAGCACTTCAAATGAAATTCCTTCAGACCAAAATGGTGTTGATCAACAAGCTAATGACAATAGTGCTGTCCCCAAAACAGGTGAAAAGCCCCATTTTGAAATTGCTCCTGGAGAAAATGACCAAAAGGTAGATGAAGACAACAATGAGAGGAAAGATGCAAAGGAAACTGGAAGTCAAGACGACAATGAGATGAAAGAAGCAAAGGAAGCTGAAAGCAAAGAAAACAGTAAAACAAAAGAAACTAAAAGGAATGAAACAAAGGAAACTGAAGGTGGAGAAAAGAAACTACAAGCTGGTGAAAAATTTTCCGCTGCCGCTTATAAGGACAACATGGATGTTGTCTCACGTGAGGATTTAAGGAGTGTCTTTGAGAAATTTGGTACAGTGAAGTACATCGATTTCAAGATCGGAGAAGTGTCAGGATATATCCGATTTGAAGAAACTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCGGTTATTTCAGAAAAGGGCGGGTTGGTTGTAAAGAATTTCATTGCTATTTTAGATCCAGTGACTGGTGAGGCAGAAAGAGAATACTGGAGCCGGCTTCGTGGTAATCAAGGCAAACACCGAGAGTTTAAGAATAAGCAGGGAAGGGGAGGATGGCATGGTAGAGGGGGAAAACATGCACGCTCTAGAGAGACTGGTTCTAGAGTTGATGGCCCAAATAAGGCTCAGAAAGTTGAAGTGCATTTGCAGATCTTACTTCGCATCTGCTCGCGCTTGGATCTGCAAATGCACTCTATTTCGATTGCTTCCTCCCTTTTCTCTTTTATCATTTTGAAGCTTGAAGCGTAA 1527 0.4113 MATQSLDEETTKKVIRQVEFYFSDSNLLTDGFMRKSITESEDGMINLALICSFNRMRKHLSLGDVKPDEVAQDVVNAVAQTLRTSASLKVSEDGKKVGRTTELPKPEEVEQVDIRTLAVSPFEYDLKLEDVEKFFGQYAKVNSVRLPHHVGDKKFFCGTALVEFSSDEEVEKIMKEKLVYAGAELELKPKKDFDAEREKELEDFKKSRPAVGSNHQNNSNEEESYPKGLIIAFKLKSTSNEIPSDQNGVDQQANDNSAVPKTGEKPHFEIAPGENDQKVDEDNNERKDAKETGSQDDNEMKEAKEAESKENSKTKETKRNETKETEGGEKKLQAGEKFSAAAYKDNMDVVSREDLRSVFEKFGTVKYIDFKIGEVSGYIRFEETEAAQKARAAAVISEKGGLVVKNFIAILDPVTGEAEREYWSRLRGNQGKHREFKNKQGRGGWHGRGGKHARSRETGSRVDGPNKAQKVEVHLQILLRICSRLDLQMHSISIASSLFSFIILKLEA 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00934 508 MobiDBLite consensus disorder prediction 241 259 - -
Spst9g00934 508 Pfam RNA binding motif 350 442 IPR014886 GO:0003723
Spst9g00934 508 CDD LA_like_plant 10 99 - -
Spst9g00934 508 MobiDBLite consensus disorder prediction 241 333 - -
Spst9g00934 508 SMART rrm1_1 341 405 IPR000504 GO:0003723
Spst9g00934 508 SMART rrm1_1 116 188 IPR000504 GO:0003723
Spst9g00934 508 Gene3D - 108 206 IPR012677 -
Spst9g00934 508 FunFam La protein 2 6 106 - -
Spst9g00934 508 Gene3D - 6 107 IPR036388 -
Spst9g00934 508 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 200 IPR000504 GO:0003723
Spst9g00934 508 SUPERFAMILY RNA-binding domain, RBD 107 191 IPR035979 GO:0003676
Spst9g00934 508 ProSiteProfiles xRRM domain profile. 331 459 IPR014886 GO:0003723
Spst9g00934 508 MobiDBLite consensus disorder prediction 434 465 - -
Spst9g00934 508 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Spst9g00934 508 Pfam La domain 14 83 IPR006630 -
Spst9g00934 508 SUPERFAMILY RNA-binding domain, RBD 350 434 IPR035979 GO:0003676
Spst9g00934 508 PRINTS Lupus La protein signature 156 174 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Spst9g00934 508 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Spst9g00934 508 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Spst9g00934 508 MobiDBLite consensus disorder prediction 267 333 - -
Spst9g00934 508 MobiDBLite consensus disorder prediction 210 224 - -
Spst9g00934 508 MobiDBLite consensus disorder prediction 198 225 - -
Spst9g00934 508 Gene3D - 338 442 IPR012677 -
Spst9g00934 508 PANTHER LUPUS LA PROTEIN-RELATED 10 322 IPR045180 -
Spst9g00934 508 SMART la 8 100 IPR006630 -
Spst9g00934 508 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 176 IPR000504 GO:0003723
Spst9g00934 508 SUPERFAMILY "Winged helix" DNA-binding domain 6 106 IPR036390 -
Spst9g00934 508 CDD RRM1_La 116 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00934 Spst-Chr9 8237244 8244669 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00934 K11090 - gmx:100803099 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00934 9 8237244 8244669 Spst9g00934 9 8237244 8244669 ECH