Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00867 ATGGCCATTCTTCAATGCACCCCCTTTCCATTTCTTTCCCTCAGAAGAACCAGTCTCAATTCCTGCAAGTCCACGTTAACCTCAGCACTCACAAACCCAACAACAACAACAACAACAAATCCGTTGTTCCTGGCGATGAACACGTTTGCCAAGTCCGAATCAGTGTCGTCCTCCTCAGCCTCTTCCTCATCAACGTACGAGGTGCCCGAGCAAGATGCTAACGATATGGACCGTGTAGCAGACAACACGTTTCGAAGGTACACGTGGAACACCAAGAGGAGTGGCAAAGGAACGGCCATTATGTGGTTCAGGAATGATCTCAGAGTTTTGGACAATGAGGCTCTCTATAAAGCATGGCTTTCCTCCGAAACCGTGTTACCTGTCTACTGCGTTGACCCTCGACTCTTTGCCACTACCTATCATTTCGGTTTTCCCAAAACCGGTGCATTGAGAGCGCAATTTATCCTTGAGTGCTTGGTTGACTTGAGGAATAATTTGATGAAGAAAGGACTTAATTTGCTTGTACAACATGGGAAGCCTGAGGATATTCTTCCTTCTCTCGCAAAAGCATTTCAAGCTCATATAGTGTATGCTCAGAAAGAAACATGCAGTGAGGAGCTGAATGTGGAAAGGTTAGTCATCAGAGGTCTTGAACAAGTTGTGACATCACCAGAAGAATCCAGTAGTGTCACAGTTTCAAACAATATCACTAAGTTGCAATTAGTTTGGGGTTCTACCATGTACCACCTTGATGATCTCCCTTTTGATGCCACTTCTTTGCCAGATGTGTATACTCAATTTCGCAAGATTGTTGAAGCCAAATGTAGCATACGCTCATGCATCAAACTACCAGCATCTCTTGGACCACCTCCCTTAGTTGAGGACTGGGGATGCCTTCCATCATTAGAGCAGCTTGGACTTTGCTCACAAAATGTCATCAAGGGGATGAAGTTTGTGGGGGGTGAAACAGCGGCATTAAGCAGAGTATATGAATACTTCTGGAAGAAGGATTTGCTGAAGGTTTATAAAGAGACCAGGAATGGGATGTTAGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGGTGAAGAGATATGAGAACGAAAGACTAGCAAATAGTTCTACCTACTGGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGATTTTCCATCTAGGTGGCCCCAGGAAAGTTCATCGCTCCTGGAGCCAAGACAAAAATTTGTTTGAATCCTGGAGAGATGGTTGTACCGGGTATCCTCTCATAGATGCCAACATGAAAGAACTATCGACTACAGGGTTTATGTCTAATCGAGGACGGCAGATTGTATGTTCCTTTCTTGTTCGTGACATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTACGGATCAGGAGTTGGGAACGATCCGAGAGAAGATCGGTATTTCAGCATCCCAAAACAGGCACAAACATATGACCCTGAAGGTGAATATGTTGCATACTGGTTGCCACAGTTGCGAAAAATCCCAAAGGAGAAAAGGAACTTCCCTGGAAATATGTACATTCCTCAAATTGTGCCTCTCAAGTTTGGAACAGCTAGTGGAAACATTAAGGACAAGTCTCTTGGTTCAAGAAGAACCAACGATAGAGGAAATGAAAGATGGAACAGGAGATAA 1782 0.4383 MAILQCTPFPFLSLRRTSLNSCKSTLTSALTNPTTTTTTNPLFLAMNTFAKSESVSSSSASSSSTYEVPEQDANDMDRVADNTFRRYTWNTKRSGKGTAIMWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFILECLVDLRNNLMKKGLNLLVQHGKPEDILPSLAKAFQAHIVYAQKETCSEELNVERLVIRGLEQVVTSPEESSSVTVSNNITKLQLVWGSTMYHLDDLPFDATSLPDVYTQFRKIVEAKCSIRSCIKLPASLGPPPLVEDWGCLPSLEQLGLCSQNVIKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEEVKRYENERLANSSTYWVLFELIWRDYFRFLSVKYGNSIFHLGGPRKVHRSWSQDKNLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRKIPKEKRNFPGNMYIPQIVPLKFGTASGNIKDKSLGSRRTNDRGNERWNRR 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00867 593 Pfam DNA photolyase 100 281 IPR006050 -
Spst9g00867 593 MobiDBLite consensus disorder prediction 572 593 - -
Spst9g00867 593 Pfam FAD binding domain of DNA photolyase 394 550 IPR005101 -
Spst9g00867 593 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 415 569 - -
Spst9g00867 593 NCBIfam DASH family cryptochrome 98 540 IPR014133 GO:0003913|GO:0006281
Spst9g00867 593 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 96 294 IPR036155 -
Spst9g00867 593 Gene3D - 245 414 - -
Spst9g00867 593 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 314 552 IPR036134 -
Spst9g00867 593 PRINTS DNA photolyase signature 441 457 IPR002081 -
Spst9g00867 593 PRINTS DNA photolyase signature 500 514 IPR002081 -
Spst9g00867 593 PRINTS DNA photolyase signature 461 479 IPR002081 -
Spst9g00867 593 PANTHER CRYPTOCHROME 97 555 IPR002081 -
Spst9g00867 593 Gene3D HUPs 63 244 IPR014729 -
Spst9g00867 593 MobiDBLite consensus disorder prediction 577 593 - -
Spst9g00867 593 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 97 232 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00867 Spst-Chr9 7600200 7605576 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00867 K25656 - gmx:100783312 1036.56