Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00857 ATGCCTCTCGGAGAAAGGTTAGGGGATAAGAGCGATTCTCGCTACTGTGGTGTGGAGACCGATTTCAACGATGATATGGCACACGTCTTCCATTTCAACCTATTTTCTGGAAGCTTCGATTTCGTTGTTGCTCCTTTGATGGATCCTTCTTATCGACCAAGTTTAATGCAAAAAGATGGTTTGGGGTCTGGTGTTCTGCCATTTGCTGGGTCAGACTTGGTCTTGAGTCCATCCCAATGGAGTAGTCATGTAGTGGGAAAAATCAGCTCATGGATAGATTTGGATTCAGAGGATGAAACCCTGAGGAGAGATTCTGAAACTACACTTAAACAAGAAATTGCTTGGGCTTCTCATCTCTCTTTACAGGCCTGCCTGCTTCCTGCTCCCAAGGGAACTTCTTGTGCTAATTACGCCAGATGTGTAAATCAAATCTTACAGGGCACACATAATATTCAGTTGTGGCTAAGGATTCCATTGATGAAGCCTGATGATGACTCTATGGATGGAAAATCTGTTACTTTGGTGGATGATTCTTGGGAATCCTGGAATTCATTTCGTCTGCTGTGTGAGCATCATAGTCAACTGTCAGTTGCACTTGATATTCTGAGTACTCTTCCTTCCACGAATTCACTGGGACGATGGTTTGGGGAGCCTGTTAGAGGAGCTATATTAAATACCGATTGCTTCCTAACTAATTCTCATGGCTGTCCATGCCTCTCCAAGCGCCACCAGAGGTTAATTACTGGTTTTTTTAATCATTCTATTCAGATCATTATATCTGGAAATTCTGTTCATCCAGAAGCAAGTATGGATGCAAATGATAGTTCTTATAAAGATTCACAAAGACATCCCTTGCGGCCTTATCTGGATTATGTTGGATATCTATACCAAAGAATGGATCCTCTTCTTGAGCAAGAACGGTTTGAGCTTGGTTACAGGGATTTTTTACAGTCACCCTTGCAACCTTTGATGGATAATTTAGAAGCTCAGACTTATGAGACTTTTGAGAAAGATGCAGTGAAATACATTCAGTACCAAAGAGCAGTTAGTAAAGCATTGCTAGACAGGGTTCCTGATGAAGAGGCATATGTTAAAACCATTGTATTGATGGTTGTTGGGGCAGGGCGTGGGCCTCTTGTGCGTGCGTCATTGCAGGCTGCTGAGGAAACTGGGCGGAAGCTCAAAGTTTATGCCGTTGAAAAGAATCCAAATGCAGTTGTCACCCTGCATGCATTGGTCAAGTTAGAAGGATGGGAGGACACTGTCACCATAGTCTCAAGCGACATGCGTCATTGGAATGCTCCTGTAAAAGCTGACATATTGGTTAGTGAATTGCTTGGTTCGTTTGGCGACAATGAACTCTCTCCTGAGTGCCTTGATGGAGCCCAGAGGTTTCTAAAGCAAGATGGAATTTCAATACCATCTTCGTACACAAGTTTCCTCCAACCAGTGACAGCTTCAAAGTTACATAATGATGTCAAGGCGCATAAAGATCTTGTACATTTTGAAACTGCTTATGTTGTGAAACTACACAATGTAGCCAAACTTTCACCCTCTCAACCTGTTTTTACATTTATTCATCCAAAACGCTCTGAACATGAAAGCAATCAACGTTATAAAAAGTTGAGTTTTGTGATTCCTAGTGACACTGGGTCAGCAATGGTGCACGGATTTGCTGGTTACTTTGATGCAACTCTTTACAAGGATGTGCATCTTGGAATTGAACCTTCAACAGCAACACCAAACATGTTCAGTTGGTTTGCAATATTTTTCCCATTAAGAGCTCCCGTTTGTGTGGGTCCTGATTCTACCCTTGAAGTGCATTTTTGGCGTTGTTGTGGTCCTACAAAGGTCTGGTACGAGTGGTGCGTTGCTTCTCCTTCGTCGTCCCCAATTCACAATAGTAATGGACGTTCATACTGGGTTGGGCTTTAG 1935 0.4274 MPLGERLGDKSDSRYCGVETDFNDDMAHVFHFNLFSGSFDFVVAPLMDPSYRPSLMQKDGLGSGVLPFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDETLRRDSETTLKQEIAWASHLSLQACLLPAPKGTSCANYARCVNQILQGTHNIQLWLRIPLMKPDDDSMDGKSVTLVDDSWESWNSFRLLCEHHSQLSVALDILSTLPSTNSLGRWFGEPVRGAILNTDCFLTNSHGCPCLSKRHQRLITGFFNHSIQIIISGNSVHPEASMDANDSSYKDSQRHPLRPYLDYVGYLYQRMDPLLEQERFELGYRDFLQSPLQPLMDNLEAQTYETFEKDAVKYIQYQRAVSKALLDRVPDEEAYVKTIVLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVVTLHALVKLEGWEDTVTIVSSDMRHWNAPVKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFLQPVTASKLHNDVKAHKDLVHFETAYVVKLHNVAKLSPSQPVFTFIHPKRSEHESNQRYKKLSFVIPSDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRAPVCVGPDSTLEVHFWRCCGPTKVWYEWCVASPSSSPIHNSNGRSYWVGL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00857 644 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 9 644 IPR025799 GO:0016274|GO:0018216
Spst9g00857 644 Gene3D Vaccinia Virus protein VP39 308 475 IPR029063 -
Spst9g00857 644 Pfam PRMT5 arginine-N-methyltransferase 305 473 IPR035075 -
Spst9g00857 644 Pfam PRMT5 oligomerisation domain 476 642 IPR035248 -
Spst9g00857 644 Gene3D - 476 643 - -
Spst9g00857 644 FunFam Protein arginine N-methyltransferase 5 476 644 - -
Spst9g00857 644 PIRSF PRMT5 3 644 IPR007857 GO:0006479|GO:0008168|GO:0035246
Spst9g00857 644 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 331 643 IPR029063 -
Spst9g00857 644 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 316 622 IPR025799 GO:0016274|GO:0018216
Spst9g00857 644 Gene3D - 14 304 - -
Spst9g00857 644 FunFam Protein arginine N-methyltransferase 5 308 475 - -
Spst9g00857 644 FunFam Protein arginine N-methyltransferase 14 305 - -
Spst9g00857 644 Pfam PRMT5 TIM barrel domain 39 298 IPR035247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00857 Spst-Chr9 7541422 7550560 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00857 K02516 - gmx:100782245 1222.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00857 9 7541422 7550560 Spst9g00857 9 7541422 7550560 ECH