Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00817 ATGGCTGCTACTCCTTCTTCTACTTACCCTTTTGGAGTTCCTTTCCACTCCCTGGGTCGAAGAGTGGATTCCTCAACCTCCCTGTTCCCCCTCCACGTGGACCTCTCTACAATTTCTATGTCCCCTCGTTCTACTTCAAAGCACAAAAGGGACATTGGGGTAATTCCCCAACTGGAGCTTTCAATGCCTTATACTTCCATACCGTGTTTGATTGCATTTGGAGGGAAAAAACAGAATGAAGAGGGAAGAATGGAGGGGACTAACGTCCCTTCTCACTTAGGATTAGTTGATCGAGTATGTGCACAGCTTGATAGTGATGATTACTACTGGGAGAAAGTTCCAACACCCATTCTTGACATGGTTGAAAACCCTTTTTGCTTGAAGAAATTATCTCTTAAGGAGCTGAAACAGCTAGCAGTTGAAATCCGTTCAGATTTGTCTTCTATTATGTCAGGTACACAAATATCACCTAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTCAATGCTCCAGTGGACAGAATATTGTGGGATGCTGGGGATCAAACATATGCACATAAGATTCTTACTGGAAGGCGATCTCTCATGAAAACAATGAGAAGAAAGAATGGTCTTTCTGGTTTTACTTCCCGATTAGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTGGGCATGGCAGTTGCCCGGGATATTAAGGGGAGGCAAGAACGTGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCGTACGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATATGGTTGTGATTTTGAATGATAGTCGTCACTCTTTACTTCCAAAAATTGATGAGGGCCCAAAGACATCTGTCAATGCCCTATCTAGTACCCTGAGCAAGCTTCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTTACAAAACGAATTGGTAGAGGTATGCATGAGTTGGCGGCTAAAGTTGATGAATATGCTCGTGGTATGATAGGTCCCCTAGGTTCTACTCTTTTTGAGGAGCTTGGGTTGTACTACATAGGCCCAGTGGATGGACACAATATTGAGGATCTAATATGTGTTCTGCAAGAAGTTGCTTCCTTGGATTCAATGGGACCCGTGTTGGTACATGTGATAACTGATGAAAATATTCAGAAAAGTGATATAACAAATAGGCAACAAAAGGATGATCCTTTTAAATCTGATTCGTTAGATAATGTTGTTCGGCCTCGAACATATGGAGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCTGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGAGTAACGATGGAGTCATCCCTTGAACTGTTTCGGGGGAAATTTCCGGATAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCTGTCACATTTGCTTCTGGTTTGGCATGTGGTGGCTTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTGCAAAGAGCCTATGATCAGGTGGTACACGATGTTGATCAACAGAGAATTCCAGTGCGCTTTGTCATTACAAGTGCAGGGTTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCATTTGATATAACCTTTATGTCATGCTTACCAAACATGATTGTCATGGCACCATCTGATGAGGTTGAACTCATGCACATGGTAGCCACTGCTACTCATACCAACAACCAACCAGTCTGCTTTCGGTATCCAAGGGGTGCCCTGGTTGGGAAAGGCTACACTGTAGGCGATGAATTCCCCATCAAGATAGGAAGAGGCAGAGTTCTTGTTGAGGGTAAAGATGTTGCTTTCCTAGGATATGGATCGATGGTTCAGAACTGCCTAAAGGCTCATTCGCTCCTTGCAAAACTCGGCGTTGAGGTGACTGTTGCCGATGCAAGGTTTTGCAAGCCCCTTGACATCAAACTTCTGAGGCAGCTTTGTAAATATCACTCTTTTCTAATTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCTCAGTGTATTGCAGTTAATGGACTACTCGATGGAAGAATTAAGTGGCGACCAATTGTCTTACCTGACACATATATTGAACATGCATCACCAAATGAACAGCTTGACCAAGCAGGGTTGAGTGGACATCACATTGCTGCCACGGCATTGAGTTTGCTAGGCCGTACACGGGAAGCTCTGCAATTTATGTGTTCCTGA 2265 0.4384 MAATPSSTYPFGVPFHSLGRRVDSSTSLFPLHVDLSTISMSPRSTSKHKRDIGVIPQLELSMPYTSIPCLIAFGGKKQNEEGRMEGTNVPSHLGLVDRVCAQLDSDDYYWEKVPTPILDMVENPFCLKKLSLKELKQLAVEIRSDLSSIMSGTQISPKASMAVVELTVAIHHVFNAPVDRILWDAGDQTYAHKILTGRRSLMKTMRRKNGLSGFTSRLESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIDEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMIGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENIQKSDITNRQQKDDPFKSDSLDNVVRPRTYGDCFVETLVAEAEKDKDIVVVHAGVTMESSLELFRGKFPDRFFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHTNNQPVCFRYPRGALVGKGYTVGDEFPIKIGRGRVLVEGKDVAFLGYGSMVQNCLKAHSLLAKLGVEVTVADARFCKPLDIKLLRQLCKYHSFLITVEEGSIGGFGSHVAQCIAVNGLLDGRIKWRPIVLPDTYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALQFMCS 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00817 754 SUPERFAMILY TK C-terminal domain-like 606 742 IPR009014 GO:0003824
Spst9g00817 754 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 117 743 IPR005477 GO:0008661|GO:0016114
Spst9g00817 754 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 118 402 IPR005477 GO:0008661|GO:0016114
Spst9g00817 754 Pfam Transketolase, pyrimidine binding domain 434 595 IPR005475 -
Spst9g00817 754 CDD TPP_PYR_DXS_TK_like 439 592 - -
Spst9g00817 754 SMART Transket_pyr_3 433 598 IPR005475 -
Spst9g00817 754 Gene3D - 433 600 - -
Spst9g00817 754 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 432 600 - -
Spst9g00817 754 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 100 749 IPR005477 GO:0008661|GO:0016114
Spst9g00817 754 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 432 621 IPR029061 -
Spst9g00817 754 Pfam Transketolase, C-terminal domain 611 734 IPR033248 -
Spst9g00817 754 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 115 495 IPR029061 -
Spst9g00817 754 Gene3D - 611 742 IPR009014 GO:0003824
Spst9g00817 754 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 611 743 - -
Spst9g00817 754 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 120 740 IPR005477 GO:0008661|GO:0016114
Spst9g00817 754 CDD TPP_DXS 159 402 IPR005477 GO:0008661|GO:0016114
Spst9g00817 754 Gene3D - 110 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00817 Spst-Chr9 7092382 7099148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00817 476 693 Acyl Lipid Metabolism Gene Families AT3G13450 25.322 2.69e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00817 K01662 - gmx:100793268 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00817 9 7092382 7099148 Spst9g00817 9 7092382 7099148 ECH