Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00810 ATGGCTTTGCCCAATCAGCAGACTGTGGAGTACCCAAGTTTCAAACTTGTAATCGTCGGCGATGGTGGCACAGGAAAGACAACCTTTGTGAAAAGGCATCTTACCGGTGAATTCGAGAAGAAATATGAACCTACAATCGGTGTGGAGGTTCACCCATTGGATTTTTTCACCAACTGTGGAAAGATTCGATTCTACTGCTGGGATACCGCTGGACAGGAGAATATTCATGGGCAATGTGCGATTATCATGTTTGATGTTACTGCCCGACTAACATACAAAAATGTCCCTACCTGGCATCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTCAAGAATAGGCAGGTGAAGGCAAAACAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATCTCAGCTAAGAGCAACTACAACTTTGAGAAACCATTTTTGTATCTCGCTCGTAAACTTGCAGGTGATCCCAACTTGCACTTTGTAGAATCTCCTGCATTGGCTCCACCTGAAGTTCAAATTGATTTAGCTGCTCAACAACAGCATGAAGCTGAGCTTGCTGCAGCTGCCAGTCAGCCCCTTCCTGACGATGATGATGATACTTTTGAGTAG 639 0.4429 MALPNQQTVEYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQENIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00810 212 SMART ras_sub_4 11 165 - -
Spst9g00810 212 SMART ran_sub_2 19 211 - -
Spst9g00810 212 NCBIfam small GTP-binding protein domain 14 155 IPR005225 GO:0005525
Spst9g00810 212 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 159 181 IPR002041 GO:0003924|GO:0005525|GO:0006913
Spst9g00810 212 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 121 139 IPR002041 GO:0003924|GO:0005525|GO:0006913
Spst9g00810 212 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Spst9g00810 212 MobiDBLite consensus disorder prediction 190 212 - -
Spst9g00810 212 FunFam GTP-binding nuclear protein 5 210 - -
Spst9g00810 212 CDD Ran 14 170 IPR002041 GO:0003924|GO:0005525|GO:0006913
Spst9g00810 212 SMART rho_sub_3 16 161 IPR001806 GO:0003924|GO:0005525
Spst9g00810 212 ProSiteProfiles small GTPase Ran family profile. 7 162 IPR002041 GO:0003924|GO:0005525|GO:0006913
Spst9g00810 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 185 IPR027417 -
Spst9g00810 212 SMART rab_sub_5 14 165 - -
Spst9g00810 212 PANTHER RAN GTPASE 1 210 IPR002041 GO:0003924|GO:0005525|GO:0006913
Spst9g00810 212 Gene3D - 3 210 IPR027417 -
Spst9g00810 212 ProSiteProfiles small GTPase Rab1 family profile. 8 212 - -
Spst9g00810 212 Pfam Ras family 15 162 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00810 Spst-Chr9 7040953 7042935 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00810 K07936 - pvy:116115705 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00810 9 7040953 7042935 Spst9g00810 9 7040953 7042935 ECH