Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00807 ATGACATCAAAAAGAGGAAAATTAAAAAAGATGCACTCGGAGACCATGCGGCCGGTGATCGTAAGGGCATGGGCAATGGGCATTGTGGTGTTTAGAGTATATAAACCACCTCAGCCATCTACACTCGTCTGCACCACAACCACACAATTCAATAACATCTCCCTCTTTAACTTCCACTCACTACCTTCAATCTTTTTTCACTCTCGTTACTCCGGAGGGAAAATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTCAACTTCCAGAGAAGAGAATCGTGCCAGCGATGCGGTGAGCCAAGGAGCGGCGGCGACTACGGCGGCTTCGCTGGCAGAGGCTCTTCCTCCTTTAGCTTCACCACCGGCCCTGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGTCTCCAAAGAAGACTCCTCCACCGGATCATACGACGTCGACATGACCCGAATGAGACCCTTCGGCTTCGGCGGCGGCGGCGGCTCCTCCGCCCGCCCTGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAACAGAATGGAGTGCTATCGATGCAATGCACCCAGGGATTCTAGTAGTGGCAGGTCTCCCTATTCGTCGTAG 696 0.5445 MTSKRGKLKKMHSETMRPVIVRAWAMGIVVFRVYKPPQPSTLVCTTTTQFNNISLFNFHSLPSIFFHSRYSGGKMSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGFAGRGSSSFSFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGVSKEDSSTGSYDVDMTRMRPFGFGGGGGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSSSGRSPYSS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00807 231 ProSitePatterns Zinc finger RanBP2-type signature. 133 154 IPR001876 -
Spst9g00807 231 ProSiteProfiles Zinc finger RanBP2 type profile. 191 222 IPR001876 -
Spst9g00807 231 ProSiteProfiles Zinc finger RanBP2 type profile. 129 160 IPR001876 -
Spst9g00807 231 SMART zf_4 193 219 IPR001876 -
Spst9g00807 231 SMART zf_4 79 103 IPR001876 -
Spst9g00807 231 SMART zf_4 131 157 IPR001876 -
Spst9g00807 231 FunFam Ran-binding zinc finger protein 181 222 - -
Spst9g00807 231 Pfam Zn-finger in Ran binding protein and others 191 220 IPR001876 -
Spst9g00807 231 Pfam Zn-finger in Ran binding protein and others 129 159 IPR001876 -
Spst9g00807 231 Pfam Zn-finger in Ran binding protein and others 77 104 IPR001876 -
Spst9g00807 231 SUPERFAMILY Ran binding protein zinc finger-like 71 107 IPR036443 -
Spst9g00807 231 PANTHER ZINC FINGER PROTEIN 126 223 - -
Spst9g00807 231 SUPERFAMILY Ran binding protein zinc finger-like 125 160 IPR036443 -
Spst9g00807 231 SUPERFAMILY Ran binding protein zinc finger-like 184 223 IPR036443 -
Spst9g00807 231 Gene3D - 124 161 - -
Spst9g00807 231 Gene3D - 75 107 - -
Spst9g00807 231 Gene3D - 184 222 - -
Spst9g00807 231 ProSitePatterns Zinc finger RanBP2-type signature. 81 100 IPR001876 -
Spst9g00807 231 ProSitePatterns Zinc finger RanBP2-type signature. 195 216 IPR001876 -
Spst9g00807 231 FunFam Ran-binding zinc finger protein 123 160 - -
Spst9g00807 231 ProSiteProfiles Zinc finger RanBP2 type profile. 77 106 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00807 Spst-Chr9 6989920 6992104 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00807 - - gmx:100811107 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00807 9 6989920 6992104 Spst9g00807 9 6989920 6992104 ECH