Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00794 ATGGACTTAGAAGCAAGTGATAAGGATTCAGTGGTTACTCAGATCAGCATTGGCGGATTTGACAGTGAGGTCAAAGCAAGCGATCTCGTGAAGTATTTGGAGGATAAAATCGGACTTGTCTACAGGTGTAGGTTGAAGACTTCTTGGACCCCTCCAGAGTCATATCCAGAATTTAATATCACTGATACTGAAAAGATTAGGAGAACGGATGACTATAAGAAAGTCGAGCCTCATGCCTTTGTGCATTTTACATCTCCAGAATCTGTGACTGCTGCCCTGAATGCCTCAAATTGTTGTGATATGTTTTTGAAGAATGAACCCTTAAAGGTTAGTTGTGGGCCTGAAAATCCATACTTCCTGAACAAGAGGAGGAGAACCACAACTCCTTTTAAGATGTGTGATGTAATTGTTGAAATTGGGACTTTGGTTAGCCCAGGGGAGTTTTTTGTTGCTTGGAGAGGGCCTGATAAAGGAGTAAAATTTCTAGTGGATCCTTTTGATAGCATGTGCAGGTTTTGTTTCACTAGAGATACTGCGTTCTCATTCAAAGGTATAGAGAAAAAAGCAGTGATAAAGTGTGATTTTCAGGTGGGATTCCTGGTTAGAGAAATTAATGAGATAAGGAGATATAATGATACATCGTATCTAGTTGTTTTATTACACCTAGCCTCTTCACCTTGGGTTTGGTACAGAACTGCCGAGGATGACATTGAAGATTCAGTACCATTTGATTTGCTGGATGACGATGATCCGTGGATTAGAACAACTGATTTTACACCTAGTGGGGCAATTGGTCGATGCAATTTTTATAAAATTTCAATCCCGCCTCGACATGGTGCAAAATTGATGAAGGCAATGCTTTATCTGAAAGGTCAAAGAGTTCAAATGCAAGAGCTTCCACTTAGACATACTCTTAGGGCACTGAATGAACCTGATTTTGGCACGCCCATGTCAGATGCTTTCTTCTATATACCTTTTAAGGAGGGCATTGCTTTTGACATAATGTTTTTGGTCAATGCTATTGTACATAAAGGCATATTCAATCAGCACAGGTTGTCGGATAGGTTTTTTGAATTGCTGAGAAATCAATCTAAGGAGCTCAATGTGGCTGCGCTGAAGCATTTATGTTCCTACAAGCGCCCAGTATTTGATGCAACTAAGAGGCTAAAAGTAGTCCAAGAATGGTTGCTCAGAAATCCAAAACTTTATCAGATCTCTAAACAGTTGGATGATATTGTTGAGGTTAGAAGATTGGTTATTACTCCATCAAAAGCCTATTGTGTACCACCCGATGTTGAACTGTCCAACAGGGTTCTCAGAAAATTCAGAGAAGTTTCAGATTGTTTCTTGAGAGTCACCTTTATGGATGAAGGCATGCAGACAATTAATGTGAATGCCCTCAACTATTATGTTGCTCCTATTGTGAAGGAAATCACATCAAAATCTTTCCCTCAAAAGACAAAAATATATCAAAGGGTGAAGACTATCTTGGAAAAGGGATTTTACTTTTGTGGCCGAAAGTATTCATTTTTAGCCTTTTCATCCAATCAACTTAGAGATCGTTCTGCTTGGTTTTTTGCTGAAGACAAGATAAGATGTGATGACATACGGAATTGGATGGGCAAGTTTAACCAAAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACAATGCTTCTCATCTACCTATGCAACAGTTGAAGTTGTTCCAAATGAAGTTAACTCCATGCTACCTGATGTTGAGAGGAACAATTACGTTTTCTCGGATGGTATTGGTATTATCACTCCTGATCTTGCAAGTGAAGTTGCGGAAAAATTGAAATTGGACAAAGTACCCTCTGCCTACCAGATCAGATACGCTGGTTTTAAAGGGGTTGTGGCCTCTTGGCCTGCTAAAGGGAATGGGATCAGACTTTCTTTGAGGCCTAGTATGAACAAATTTCAATCTACTCATACTATCTTGGAGATATGTGCTTGGACTAGGTTTCAGCCCGGTTTCCTTAACAGACAGATTATAATATTGCTTTCTGCATTGGGTGTGCCTGATGATATATTTTGGCAAATGCAGGAGGCAATGCTTTGGAAGTTAAATCAAATGCTTGTGGATGCAGATATAGCTTTTGACGTTCTTACCAAATCATGTGCTGAGCATGGGAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCCTAACAGAACCTCATCTAAGAGGTATGATAACTTCTACACGTGCTGCACAGCTTTGGGGACTTAGAGAAAAGTCCAGGATTTTTGTATCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTTGGGTGTGCTTGAACAAGGACAATGCTTTGTTCAAGTGTCTACTCCTTCTCTTCAAAATTGTTTCTCCAAGCATGGCTCAAGATTTTCAGAGACAAAGAACCTGCATGTAGTTAAAGGTTTTGTGGTTATAGCCAAAAATCCCTGCCTTCATCCAGGAGATGTAAGAATCTTGGAGGCAGTTGATGCCCTCGATTTACATCATTTATATGATTGCCTTGTTTTCCCTCAAAAGGGTGACAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTATATTTTGTCACATGGGATGAAAATCTCATTCCACCAAGTAGGAGGAGCTGGATACCTATGGAGTATGCCCCTCAAGAAAGCAAACTTCAGACACGTCAAGTCATGACCCGAGACATAATAGAATTTTTTGTCAGAAACATGGTAAATGAACATTTGGGTGCTATCTGCAATGCACATGTGGTACATGCTGATTCCAGTGACTATGGTGCTTTGGATGAGAAATGCATACACTTGGCGGAGCTAGCTGCCACTGCTGTTGATTTTCCAAAGACAGGGAAGCTTGTCACTATGCCTTCTCATCTGAAACCAAAACTGTACCCTGATTTCATGGGGAAAGAGAAGCATCAGTCGTACAGGTCGAAGAAAATCTTGGGTAGACTTTACCGGTGTATCAAAGATGCCTATGATGAAGATATTGATGCACCCTATATGAACTTTGTGTATGGTGATATACCATATGACAAAGATCTTGAGGTTCCAGGATCTGCTGATTTTATTGCTGATGCGTGGGAGCAAAAATGCGCATACGACGGCCAGTTGAGTGGGCTACTTGGTCAATACAAAGTGAAAAGAGAAGAGGAAGTTGTTACTGGACAGATCTGGTCCATGCCAAAATACAACAGTAGAAAGCAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCATACAGTGCCCTGAAAAAGGAATTCAGGCACACTTTTGAGAAATTGAGTTCAGATGTTGGAGATTTAAGTGAGGAAGAAAAAAATTTGTTGTATGAGCAGAAAGCTTCGGCCTGGTACCAGGTGACATATCACCCTCAATGGGTCCAAAAAACCCATGATCTGCAAGATAAATCCCCAGAGAACCAAGAGGCTGATGGTTTGGGAATCACGGTGATGTTGAGTTTTCCTTGGATTGCAGTTGATTACCTAGCTCGCACTAAGATAAGGGAACGGCATCGAAAATCTGGAAATTTTGATTCAACTAAGCCAGTTGATTCTCTGGCTAAGTATCTATCTGAAAGGTTATAA 3615 0.4091 MDLEASDKDSVVTQISIGGFDSEVKASDLVKYLEDKIGLVYRCRLKTSWTPPESYPEFNITDTEKIRRTDDYKKVEPHAFVHFTSPESVTAALNASNCCDMFLKNEPLKVSCGPENPYFLNKRRRTTTPFKMCDVIVEIGTLVSPGEFFVAWRGPDKGVKFLVDPFDSMCRFCFTRDTAFSFKGIEKKAVIKCDFQVGFLVREINEIRRYNDTSYLVVLLHLASSPWVWYRTAEDDIEDSVPFDLLDDDDPWIRTTDFTPSGAIGRCNFYKISIPPRHGAKLMKAMLYLKGQRVQMQELPLRHTLRALNEPDFGTPMSDAFFYIPFKEGIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQSKELNVAALKHLCSYKRPVFDATKRLKVVQEWLLRNPKLYQISKQLDDIVEVRRLVITPSKAYCVPPDVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSKSFPQKTKIYQRVKTILEKGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKIRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYATVEVVPNEVNSMLPDVERNNYVFSDGIGIITPDLASEVAEKLKLDKVPSAYQIRYAGFKGVVASWPAKGNGIRLSLRPSMNKFQSTHTILEICAWTRFQPGFLNRQIIILLSALGVPDDIFWQMQEAMLWKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMITSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLQNCFSKHGSRFSETKNLHVVKGFVVIAKNPCLHPGDVRILEAVDALDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSRRSWIPMEYAPQESKLQTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPSHLKPKLYPDFMGKEKHQSYRSKKILGRLYRCIKDAYDEDIDAPYMNFVYGDIPYDKDLEVPGSADFIADAWEQKCAYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRHTFEKLSSDVGDLSEEEKNLLYEQKASAWYQVTYHPQWVQKTHDLQDKSPENQEADGLGITVMLSFPWIAVDYLARTKIRERHRKSGNFDSTKPVDSLAKYLSERL 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00794 1204 Gene3D - 3 118 IPR012677 -
Spst9g00794 1204 SUPERFAMILY RNA-binding domain, RBD 10 121 IPR035979 GO:0003676
Spst9g00794 1204 CDD RRM_SF 15 111 - -
Spst9g00794 1204 PANTHER RNA-DEPENDENT RNA POLYMERASE 11 1201 IPR007855 GO:0003968
Spst9g00794 1204 Pfam RNA dependent RNA polymerase 420 997 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00794 Spst-Chr9 6852152 6856205 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00794 K11699 - gmx:100795178 2297.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00794 9 6852152 6856205 Spst9g00794 9 6852152 6856205 ECH