Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00778 ATGGCTCCGACAACGATCCGGAAGGCGATTGGGGTGGTGAAGGACCAGACCAGCATAGGGATTGCCAAGGTCGCCAGCAACATGGCGCCGGAGATGGAGGTCGCGATTGTGAAGGCCACCAGCCACGACGACGACCCTGCCAGTGAGAAGTACGTCAGGGAGATTTTGAATCTCATGTCGCACTCGCGCGGCTACGTCCACGCCTGCGTCTCCGCGGTGTCCAAGCGTTTGGGGAAGACGCGCGACTGGATTGTGGCGCTCAAGGCGCTCATGCTCGTGCACAGGCTCATGAACGAGGGTCCCTCGCTGTTCCAGGAGGAGATCCTGTACGCCACCCGTAGGGGAACACGGCTCCTCAATATGTCTGATTTCAGAGACGAAGCTCACTCTAGCTCCTGGGATCACTCCGCTTTTGTCAGGACCTATGCTATGTATCTCGACCAGAGGCTTGAGTTGATGCTGTTTGATAGAAAAAGCACCGCCGCCGGTGCCGATGGTGGCAGTGTTGGTGCTAGCGGTGCTGATGATAGGTTTGGTGGAAGGGACAATTTCCGGTCGCCGCCTTATGAGTACGGTGGGGGGGAATTTAGAGGGGAAGGTAGTTATGGGAATGGGATGAGGAGGACGAGGTCTTTTGGGGACATGAGTGAATCGGTGGGAAGGGGGGATGAGAAGAGGGTTGTGAGTGTGACTCCTTTGAGGGATATGACTCCGGAGAGGGTTTTCGGGAAGATGGGTCATTTGCAGAGGTTGTTGGATCGGTTTTTGGCTTGTAGACCTACTGGGTTGGCGAAGAACAGTAGGATGGTTTTGATTGCTTTGTATCCGGTGGTTAAGGAGAGTTTTCAGTTGTATGCTGATATATGTGAGGTTTTGGCTGTGTTGCTTGATAAGTTCTTTGATATGGAGTACGCTGATTGCGTGAAGGCTTTTGATGCCTATGCCAGTGCGGCTAAGCAGATTGATGAGCTTGTTGCTTTTTACAATTGGTGTAAGAATACTGGTGTGGCAAGGTCCTCGGAGTACCCTGAGGTTCAGAGGATTACCAGCAAGTTGCTTGAGACGTTGGAGGAGTTTGTAAGGGATAGAGCCAAGAGGCCGAAGAGTCCGGAGAGAAAAGAGGAGGCTCCGCCTGTAGAGAAGGTAGAGGAGGAGCCAGCACCGGATATGAATGAAATCAAGGCACTGCCTCCACCAGAGAATTATACCCCTCCTCCTCCACCTGAGCCGGAGCCTCAGCCTAAGCCGCAGGTTACAGAGGATTTAGTTAATCTAAGAGACGATGCAGGCACTGCAGATGACCAGGGGAATAAATTGGCTTTGGCACTGTTTGCTGGTGCGCCTGCTAATAATGCTAATGGATCATGGGAAGCATTCCCTTCAAATGGACAACCAGAAGTAACTTCAGCCTGGCAAACCCCGGCTGCAGAGCCTGGGAAAGCTGATTGGGAATTGGCATTGGTAGAGACTGCTAGCAATTTGTCGAAGCAGAAGGCAGCTTTAGGTGGTGGGTTAGATCCTCTGTTGTTGACTGGCATGTATGACCAAGGAATGGTCAGGCAGCATGTCAGCACTACCCAACTGAGTGGAGGAAGTGCTAGCAGTGTGGCGTTGCCAGGACCGGGAAAGACTACAACCCCTGTTTTGGCTCTCCCGGCCCCAGATGGATCTGTTCAGCCAGTTAATCAGGATCCATTTGCTGCATCATTGAGCATTCCACCCCCATCCTATGTGCAAATGGCCGATATGGAGAAGAAGCAGCATTTGCTCGTGCAGGAGCAGCAGGTGTGGCATCAGTATGCTAGGGATGGGATGCAAGGCCAATCTAGTTTGGCCAAACTTAGTGGCACTGGATACTATGGCGGAGGTCCTATGCCCATGATGCCTTATGGAATGCCCCCAGTCAATGGAATGGGACCTCCAGCCGGGTACTATCACACTCCTTACTGA 1950 0.5267 MAPTTIRKAIGVVKDQTSIGIAKVASNMAPEMEVAIVKATSHDDDPASEKYVREILNLMSHSRGYVHACVSAVSKRLGKTRDWIVALKALMLVHRLMNEGPSLFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMYLDQRLELMLFDRKSTAAGADGGSVGASGADDRFGGRDNFRSPPYEYGGGEFRGEGSYGNGMRRTRSFGDMSESVGRGDEKRVVSVTPLRDMTPERVFGKMGHLQRLLDRFLACRPTGLAKNSRMVLIALYPVVKESFQLYADICEVLAVLLDKFFDMEYADCVKAFDAYASAAKQIDELVAFYNWCKNTGVARSSEYPEVQRITSKLLETLEEFVRDRAKRPKSPERKEEAPPVEKVEEEPAPDMNEIKALPPPENYTPPPPPEPEPQPKPQVTEDLVNLRDDAGTADDQGNKLALALFAGAPANNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLSKQKAALGGGLDPLLLTGMYDQGMVRQHVSTTQLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLSIPPPSYVQMADMEKKQHLLVQEQQVWHQYARDGMQGQSSLAKLSGTGYYGGGPMPMMPYGMPPVNGMGPPAGYYHTPY 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00778 649 SMART enth_2 30 160 IPR013809 -
Spst9g00778 649 MobiDBLite consensus disorder prediction 162 181 - -
Spst9g00778 649 MobiDBLite consensus disorder prediction 186 205 - -
Spst9g00778 649 CDD ANTH_N_AP180_plant 33 152 - -
Spst9g00778 649 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 592 IPR045192 GO:0048268|GO:0072583
Spst9g00778 649 Gene3D - 2 156 IPR008942 -
Spst9g00778 649 FunFam putative clathrin assembly protein At2g25430 227 372 - -
Spst9g00778 649 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Spst9g00778 649 MobiDBLite consensus disorder prediction 361 390 - -
Spst9g00778 649 Pfam ANTH domain 32 362 IPR011417 GO:0005543
Spst9g00778 649 MobiDBLite consensus disorder prediction 361 417 - -
Spst9g00778 649 Gene3D ANTH domain 225 373 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Spst9g00778 649 FunFam Clathrin coat assembly protein 3 156 - -
Spst9g00778 649 SUPERFAMILY GAT-like domain 232 362 - -
Spst9g00778 649 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Spst9g00778 649 MobiDBLite consensus disorder prediction 398 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00778 Spst-Chr9 6682398 6684347 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00778 - - gmx:100803282 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00778 9 6682398 6684347 Spst9g00778 9 6682398 6684347 ECH