Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00708 ATGGGTCACGTGGGTTCCAGCAAGGACGGCACCAAGGCGGGGATGGCCACCGCGATGATGGACATCGACGATGATGACGACGATCTCGGTGACCTCGACCCGACCAATGCCGAAATCCTCGAAGAATTCGGCGGAGAGGACGCGTTCCGATACCACTGCAAGAAGTTCTCGATGCTGTTCTTCGAGGAGTATGGTCTGATAAGCCACCAGATAAACTCCTTCAACCACTATGTCGAAGCCGGCCTCCAGAGAACCTTTGATGGTTTCGGCGACCTTGTCGTCACACCCGGCTTCGACCCCTCCAAGAAGGGAGACAATGAGCACTACCGCTACGCCACCGTCCAGTTCGGCAAGGTCAAGCTTGAGAAGCCCATGTTCTGGGGCGGCGACGCCAATGCACAGGAGTTTAAGATGCTTCCGCGACACGCACGGCTTCAGAGAATGACTTACGCGTCGAAAATGAAAATTGTAGTTAAAGTTCAGGTGTATGTTCCGAAGAAGGTTCGGAGTGATAAGTTCAAGACTGGGAAGGAAGAGTTCCTTGATAAAGAAATTCTTAAGGAAGATGAGAGGGAGATCATCATTGGGAGATTGCCTGTTATGGTCAAGTCTGATTTATGTTGGATGAAAGGTGAAAAGGATGATTGTGAATTTGACCATGGAGGTTATTTTCTTATCAAGGGTGCAGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTAAAGAGGCTATGGGTTTTAAAGAGTCCATGTTGGATGATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGGTTATTAAGCTAGTAGGCAATTCTAAGAATGAAGAAGGGGAGAACGGAGACATGTTTCTTACTGTGTATTTTTTGTCTGTTGAGGTTCCTGTGTGGGTACTATTTTTCGCTCTTGGTGTCACATCTGATAAAGATGTTGTAGATCTCATTGGTTGTGACAGTGATGATGTCAGAATTCAGAATATTCTCCTTGCGTCTGTTCGGGATGCTGATGAGAAATGTGGAGCATTTCGGAGAGGAAGGAATGCAGTTCAATATTTAGAGAAGTGCGTAAAAAGTGTCCAATTTCCACCTTCGGAGTCCATTCAGGAGTGCCTTGAAATGTATGTCTTTCCTGGAATTAGCGGCTTAAATAGAAAGGCACGCTTCCTTGCGTATATGGTGAAGGGGCTCTTGCTTGCTTATACTGGCCGCAGAAAATGTGACAACAGGGATGATTATCGTAATAAGAGGCTTGAATTGGCCGGTGAGCTTCTTGACCGTGAGTTGAAAGTGCACATAGCACATGCTCGAAAGCGAATGTCAAAGGCATTGCAAAGGGACCTTTATGGAGATCGGGATGTACGCCCAATTGAGCACTATCTTGATGCGTCAATAATTACAAATGGTTTGCAAAGGGCATTTTCAACAGGAGCATGGTCACATCCGTACAAGAGGATGGAAAGGATATCTGGTGTGGTTGCAAATGTTGGGCGCACTAATCCCTTACAAACCATCGCTGAGCTAAGAAGAACGAGGCAGCAGGTCCAATACACTGGAAAAGTTGGGGATGCTAGATATCCGCATCCTTCTCACTGGGGCAAGGTTTGTTTCATCTCTACCCCAGATGGTGAAAATTGTGGACTAGTAAAGAATATGGCTGTCACGGGGCTAGTAAGCACTGACGTGTCTAATGCATCTCAATCTATACTGCCTACACTGTTGGATTGTGGAATGGAAGAACTTGTCAATGATGTTTCCACTCATTTGGGCAACAAGGACAAAGTCTTCCTAAATGGTGATTGGGTTGGAGTGTGTCCAGATTCCAGATTGTTTGTGGCGGAGCTACGAAGTAGAAGACGTAAAAATGAACTGCCTCATCAGGTGGAAGTCAAGAGAGATCAATCTCAACATGAAGTGCGGATATACTCTGATGCAGGAAGGATTCTGCGTCCTCTCTTGGTAGTTGGTAATCTACTCAAGATTAAACGATTTAAATCAGATCGTTACACTTTCCAGACTCTATTGGAAGAAGGTGTGATTGAGCTGATTGGACCTGAAGAAGAGGAAGACTGCTGTACTGCCTGGGGTGTTCAGTATTTATTTGGAAAAGAGGGGAAAAGATCTGTGAAGTACACACACTGTGAACTTGATGTGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTACTCTACCAATCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCCACTTTAAACCCGAATATTAGAGTTGATACTTTGTCTCACCAGTTACACTATCCCCAAAGGCCTCTTTTTCAAACCATGACTTCAGATTGTCTTGGAAAACCAGCCTATCCACTGGGTCGAAGTAAAATACCTCCGAAGGCAGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTTCATCTGGGATACAACCAAGAGGATTCCTTGGTGATGAATCGTGCTTCATTGCAGCGTGGTATGTTCAGATCTGAGCATATAAGGAGTTACAAATCTGAAATTGAGAATAAGGAATCATCAGAGAAGAAGCGAAAACCTGAAGACATTGTAAATTTTGGAAAGCTACAAAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGCTTTCCATATGTTGGGGCAAACTTGCAGAGTGGTGATATTATCATTGGGCGATGTGCTGAGTCCGGTGCAGACAATAGTGTAAAGTTAAAGCACACTGAAAAGGGTTATGTGCAAAAGGTTGTGCTGTCTTCGAACGACGAGGGGAAAAATTTTGCATTCGTTTCATTGAGACAGGTTCGAAGTCCAGTTCTTGGTGACAAGTTCTCCAGTATGCATGGACAAAAGGGAGTTTTGGGATTTCTGGAGTGTCAGGAAAATTTTCCTTTCACAAGACAAGGCATTGTTCCTGATATAGTAATTAATCCGCATGCATTTCCCTCTCGACAAACTCCTGGGCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTAAACTGAGACATGCTACGCCTTTCTCCACTCCTTCTGTTGATGCCATTACTGACCAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTATACAATGGAAGGACTGGTGAGATGGTCCGATCACTCATTTTTATGGGACCAACGTTTTACCAACGTCTGCATCATATGTCTGAAGACAAGGTGAAATTCCGCAATACTGGTCCTGTTCACCCATTGACCCGACAGCCTGTAGCTGATAGAAAACGATTTGGAGGTATCAAGTTCGGTGAAATGGAGCGTGATTGCTTGATAGCTCATGGTGCATCAGCCAACCTTTATGAACGCCTCTTTACACTCAGTGACTCCTCTCAGATTCACATCTGCAGACAATGCCAAAATGTTTCAAATGTGATCTTGAGGCCAGTCTCTGGTGGCCGGAAAGTTAGAGGGCCTTATTGCCGCCACTGTGAATCTGCTGATGACATTGTGGTTGCCCATGTCCCATATGGAGCAAAATTATTATGCCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACCCAACTTTGCTAG 3600 0.4472 MGHVGSSKDGTKAGMATAMMDIDDDDDDLGDLDPTNAEILEEFGGEDAFRYHCKKFSMLFFEEYGLISHQINSFNHYVEAGLQRTFDGFGDLVVTPGFDPSKKGDNEHYRYATVQFGKVKLEKPMFWGGDANAQEFKMLPRHARLQRMTYASKMKIVVKVQVYVPKKVRSDKFKTGKEEFLDKEILKEDEREIIIGRLPVMVKSDLCWMKGEKDDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVLKSPCWMIAYKSQMKRNRMVIKLVGNSKNEEGENGDMFLTVYFLSVEVPVWVLFFALGVTSDKDVVDLIGCDSDDVRIQNILLASVRDADEKCGAFRRGRNAVQYLEKCVKSVQFPPSESIQECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDYRNKRLELAGELLDRELKVHIAHARKRMSKALQRDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTIAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFISTPDGENCGLVKNMAVTGLVSTDVSNASQSILPTLLDCGMEELVNDVSTHLGNKDKVFLNGDWVGVCPDSRLFVAELRSRRRKNELPHQVEVKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKRFKSDRYTFQTLLEEGVIELIGPEEEEDCCTAWGVQYLFGKEGKRSVKYTHCELDVSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPNIRVDTLSHQLHYPQRPLFQTMTSDCLGKPAYPLGRSKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIENKESSEKKRKPEDIVNFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADNSVKLKHTEKGYVQKVVLSSNDEGKNFAFVSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRHATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICRQCQNVSNVILRPVSGGRKVRGPYCRHCESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00708 1199 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 59 1193 IPR015712 GO:0003899|GO:0006351|GO:0032549
Spst9g00708 1199 Pfam RNA polymerase Rpb2, domain 2 274 418 IPR007642 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 Pfam RNA polymerase Rpb2, domain 3 497 554 IPR007645 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 Pfam RNA polymerase Rpb2, domain 5 670 716 IPR007647 GO:0006351
Spst9g00708 1199 Pfam RNA polymerase Rpb2, domain 6 725 1096 IPR007120 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 Pfam RNA polymerase Rpb2, domain 4 594 654 IPR007646 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 ProSitePatterns RNA polymerases beta chain signature. 949 961 IPR007121 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 Pfam RNA polymerase Rpb2, domain 7 1098 1196 IPR007641 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 Gene3D RNA polymerase Rpb2, domain 2 248 406 IPR037034 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 CDD RNA_pol_B_RPB2 66 1195 IPR015712 GO:0003899|GO:0006351|GO:0032549
Spst9g00708 1199 Gene3D - 756 945 IPR014724 GO:0003899
Spst9g00708 1199 FunFam DNA-directed RNA polymerase subunit beta 58 241 - -
Spst9g00708 1199 Pfam RNA polymerase beta subunit 65 455 IPR007644 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 Gene3D - 407 592 - -
Spst9g00708 1199 Gene3D - 59 240 - -
Spst9g00708 1199 FunFam DNA-directed RNA polymerase subunit beta 406 597 - -
Spst9g00708 1199 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 51 1196 - -
Spst9g00708 1199 FunFam DNA-directed RNA polymerase subunit beta 1083 1197 - -
Spst9g00708 1199 Gene3D - 726 1082 IPR037033 GO:0003677|GO:0003899|GO:0006351
Spst9g00708 1199 Gene3D RNA polymerase alpha subunit dimerisation domain 1083 1197 - -
Spst9g00708 1199 FunFam DNA-directed RNA polymerase subunit beta 826 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00708 Spst-Chr9 6039162 6044552 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00708 K16252 - gmx:100815934 2184.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00708 9 6039162 6044552 Spst9g00708 9 6039162 6044552 ECH