Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00701 ATGGCTGTTATAATGCTCCGTTCGTCAACCTCTTCTTGTGCTTTGGGTGATACCAATGTTTATGTTATGAGCAATAATGGATTCTTTGGAGGAACCCCATTTGTTAAAATGAAATCTTTGCCAAATAGGTCTTTGGTAAATTGGAAGAAACATGGTAAAAGACAATTGGGTATTCGTGTCTTAGAGACAAGATGTGCCCATGAAGTGGTTGCAGTAAATGGCAAGAGCAAAACTAGAGTGTCTTCTGAAGAAGTTATTGGCGTTTTGAAGTCAATTTCGAATCCAAATTCTGCTCTTTCGTACTTTAAGATGGTTTCCCAGTTGCCTAATCTTGTGCATACACCTGAAACATGTAATTACATGCTTGAGATCCTCAGGATTCATGGGAAAGTTGAGGATATGGCTTTTGTTTTTGATTTTATGCAAAAGGAAGTGATTAACAGGAATCCGAATACATATTTGACTGTTTTTAAGGCTCTTTCCATTAAAGGTGGGATTCGACAAGCACCATTTGCACTTGGAAAGATGAGGCAAGCTGGGTTTGTATTGAATACTTATTCATATAATGGACTGATTCATTTCCTACTCCAACCTGGCTTTTGTAAAGAGGCTTTAAAGGTTTACAAAAGAATGATCTCGGAAGGGATGAAGCCTAGTATGAAAACTTACTCAGCGTTAATGGTAGCATTGGGGAAGAGGAGGGAGACTGGAACCATTATGGATTTATTGGAAGAGATGAAAACATTAGGTTTGAGGCCAAATATCTACACATATACCATATGTATTAGAGTGCTTGGGAGGGCAGGGAGAATCGATGATGCTTTTGGGATTTTAAAGACAATGGACGATGAAGGATGCGGCCCTGATGTTGTCACCTATACAGTTCTAATTGATGCCCTTTGTGCTGCAGGGAAACTTGATAAGGCCATGGAATTATACACAACTATGAGAGCCAGCGGTCACAAACCAGATCAGGTGACTTACATTACTTTAATGAGCATGTTCGGTAATTATGGTAACTTGGACATGGTGAAAAGATTCTGGAGGGAGATGGAGGCTGATGGTTATGCTTCTGATGTAGTTTCCTACACTATAATTGTTGAGGCTTTATGCAAGTCTGGAAAAGTTGATCAGGCATTTGATATGTTAGATGTGATGAGAGTGAAAGGAGTTCTTCCAAATCTTCATACTTACAACACGTTGATCTCTGGACTTCTAAACCTCGGAAGATTAGATGAGGCATTAGAGCTTTTCAACAATCTGGAATCTTTGGGTGTTGAACCAACTTCTTATTCATACGTTCTTTTCATTGACTACTATGGAAAGTTGGGTGATCCTGAAAAAGCTCTTGACACCTTTCACGAAATGAAAAAGAGAGGTATTTTGCCTAGTATAGCAGCATGCAATGCATCTTTATATAGTCTTGCTGAAACAGGTAGGATCAGAGAAGCAAAAGATATATTCAATGATCTTCACAATTGTGGGCTTTTACCTGATTCAGTAACCTATAACATGATGATGAAGTGCTACAGCAAAGCAGGGCAAATAGACAAATCCACAAAACTTTTGACTGAGATGTTAAGCGAAGGGTGTGAACCAGATATAATTGTAGTTAATTCTTTAATTGACACACTTTACAAGGCTAACCGAGTTGATGAGGCATGGGAAATGTTTGGCAGACTAAAGGATTTGAAGCTAGCTCCTACAGTTGTGACATACAACATTTTACTTACTGGTTTAGGGAGAGAGGGAAAACTCCTAAAGGCCCTTGATTTGTTCGGGAGTATGAATGAGTCTGGATGTCCTCCAAACACAGTGACTTTTAACGCACTCCTTGATTGTCTTTGCAAGAATGATGCAGTTGATTTGGCCTTGAAAATGTTCTGTAGAATGACAATCATGAACTGTAGTCCTGATGTTCTGACTTATAACACTATCATCTATGGCTTGCTAAAAGAAGGCAGAGTTGATTATGCATTCTGGTTTTACCATCAAATGAAGAAATTTCTCTCTCCTGATCATGTAACTTTGTACACCCTCCTTCCCGGTGTTGTAAAGTATGGAAGTATTGAGGATGCAATCAAGATTGTCATGGAATTTGTACATCAACCTGGTTTACAGACTAGCAGTCAATTCTGGGGAGAATTAATGGAATGTATTTTGATTGAAGCAGAAATAGAAGAGGCCATTGCATTTGCTGAAGGATTGGTTTGCAATTCTATTTGCCGAGATGATAATTTGATATTACCTTTGGTTAGAGTCCTATGCAAGCGGAACAAGGTTCTTGATGCTCAAGCTTTGTTTGACAAATTCACCAAAACTTTGGGAATTCACCCCTCGTCCGAATCATATAACTGCTTGATAGATGGGTTTCTTGGAAGTAATATCACTGAAGCAGCTTTCAAACTTTTTGTTGAGATGAAGAATGCAGGTTGTTGCCCAAATGTTTTCACCTACAACTTGTTACTTGATGCTCATGGTAAATCAAAGAGGATTGATGAACTTTTTGAACTGTACAATAATATGCACTATAGGGGATGCAAGCCGAATACTATAACCCATAATATCATCATCTCAGCCCTTGTGAAATCTAAACACTTAAATAAGGCATTAGATTTATACTATGATCTCGTAAGTGGTGAATTCTCTCCCACACCTTGTACATATGGCCCTCTTATAGACGGCCTCCTAAAGGCTGGAAGATTGGAGGAAGCGATGAAGATTTTTGAGGAGATGACAGACTATCATTGCAAGCCCAACTGTGCGATTTATAACATTCTCATCAACGGATTAGGGAAAGCAGGTAACGTTGATATTGCTTGTGATTTGTTCAAAAGGATGGTTAAAGAAGGGATAAGGCCAGACTTGAAGTCTTATACCATTCTTGTAGAATGTCTGAGCATGAATGGCAGAGTTGATGAAGCTGTGCACTACTTTGAGGAGCTGAAGTTAAGTGGCCTTGACCCTGATACTGTTTCTTACAATCTTATGATCAATGGTCTTGGAAAATCACGTAGATTGGAGGAAGTTCTTTCTCTTTTTAGTGAAATGAAGAATAGGGGAGTCACTCCTGATCTTTATACTTACAATGCATTGATTCTCCATTTTGGAAATGCTGGAAAGGTGGACCAAGCGGGAAAGATGTTTGAGGAACTGGAACTTATGGGTCTTGAACCTAATGTCTTCACGTACAATGCTCTCATTCGTGGGCATACTATGTCAGGGGACAAAGATCGAGCCTTTTCTATCCTCAAGAAGATGATGGTTGTGGGGTGTAGCCCCAATGCAGGAACATTTGCTCAATTGCCTGATAAATGTTGA 3321 0.3921 MAVIMLRSSTSSCALGDTNVYVMSNNGFFGGTPFVKMKSLPNRSLVNWKKHGKRQLGIRVLETRCAHEVVAVNGKSKTRVSSEEVIGVLKSISNPNSALSYFKMVSQLPNLVHTPETCNYMLEILRIHGKVEDMAFVFDFMQKEVINRNPNTYLTVFKALSIKGGIRQAPFALGKMRQAGFVLNTYSYNGLIHFLLQPGFCKEALKVYKRMISEGMKPSMKTYSALMVALGKRRETGTIMDLLEEMKTLGLRPNIYTYTICIRVLGRAGRIDDAFGILKTMDDEGCGPDVVTYTVLIDALCAAGKLDKAMELYTTMRASGHKPDQVTYITLMSMFGNYGNLDMVKRFWREMEADGYASDVVSYTIIVEALCKSGKVDQAFDMLDVMRVKGVLPNLHTYNTLISGLLNLGRLDEALELFNNLESLGVEPTSYSYVLFIDYYGKLGDPEKALDTFHEMKKRGILPSIAACNASLYSLAETGRIREAKDIFNDLHNCGLLPDSVTYNMMMKCYSKAGQIDKSTKLLTEMLSEGCEPDIIVVNSLIDTLYKANRVDEAWEMFGRLKDLKLAPTVVTYNILLTGLGREGKLLKALDLFGSMNESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLLKEGRVDYAFWFYHQMKKFLSPDHVTLYTLLPGVVKYGSIEDAIKIVMEFVHQPGLQTSSQFWGELMECILIEAEIEEAIAFAEGLVCNSICRDDNLILPLVRVLCKRNKVLDAQALFDKFTKTLGIHPSSESYNCLIDGFLGSNITEAAFKLFVEMKNAGCCPNVFTYNLLLDAHGKSKRIDELFELYNNMHYRGCKPNTITHNIIISALVKSKHLNKALDLYYDLVSGEFSPTPCTYGPLIDGLLKAGRLEEAMKIFEEMTDYHCKPNCAIYNILINGLGKAGNVDIACDLFKRMVKEGIRPDLKSYTILVECLSMNGRVDEAVHYFEELKLSGLDPDTVSYNLMINGLGKSRRLEEVLSLFSEMKNRGVTPDLYTYNALILHFGNAGKVDQAGKMFEELELMGLEPNVFTYNALIRGHTMSGDKDRAFSILKKMMVVGCSPNAGTFAQLPDKC 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 743 865 IPR011990 GO:0005515
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat 538 564 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat 783 812 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat 432 461 IPR002885 -
Spst9g00701 1106 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 281 509 - -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 850 884 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 815 849 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1060 1094 IPR002885 -
Spst9g00701 1106 Pfam Pentatricopeptide repeat domain 175 233 IPR002885 -
Spst9g00701 1106 Pfam Pentatricopeptide repeat domain 1048 1100 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat family 359 406 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat family 288 335 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat family 568 617 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat family 814 863 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat family 919 966 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat family 498 535 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat family 989 1033 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 920 954 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1025 1059 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat 882 913 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat 250 281 IPR002885 -
Spst9g00701 1106 Pfam PPR repeat 634 667 IPR002885 -
Spst9g00701 1106 SUPERFAMILY HCP-like 405 628 - -
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 282 350 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 633 703 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 563 632 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 212 281 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 1055 1105 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 423 493 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 351 422 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 61 211 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 494 562 IPR011990 GO:0005515
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 985 1054 IPR011990 GO:0005515
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 955 989 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 852 885 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 468 500 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 817 851 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 326 359 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 887 921 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 222 255 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 1027 1061 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 537 569 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 256 290 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 923 955 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 501 535 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 783 816 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 186 219 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 992 1025 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 571 605 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 431 464 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 291 324 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 396 429 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 642 668 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 1062 1096 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 606 640 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 958 991 IPR002885 -
Spst9g00701 1106 NCBIfam pentatricopeptide repeat 361 394 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 990 1024 IPR002885 -
Spst9g00701 1106 SUPERFAMILY TPR-like 292 451 IPR011990 GO:0005515
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Spst9g00701 1106 Gene3D Tetratricopeptide repeat domain 866 984 IPR011990 GO:0005515
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 639 669 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Spst9g00701 1106 SUPERFAMILY HCP-like 892 1088 - -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 885 919 IPR002885 -
Spst9g00701 1106 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00701 324 856 Glycosyltransferase AT1G05670 25.859 4.84e-53 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00701 - - gmx:100778358 1975.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00701 9 5993878 5997198 Spst9g00701 9 5993878 5997198 ECH