Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00679 ATGCTTGTCTCGGGAGTGTCCTCATCATCATGGGATCTCAAATGGCTCCTGCAATTCGTGTTCTCCGCGTTCGTCTTGGCGATGGGGTTGCACGCGCTCGTGAAGAACACCGCCTCCAAGTACTTCGAGGTTGAGGCCCCTTTCGAAGGGGAACAACAACAACAACAACAACACAACCACAACCACTCCATGCCCGGTCTTCTCATGGACGATTCTCTCTGCGCCGTTTGTCGCAACCCTGGGAGCAAGAAGTGTTCGCGATGCAAATCCGTTCGATACTGTGCTGCTGCGAATTTGAGTTCACAAGCATGCCAACAGGCACACTGGAAATCCGAGCATAAGACGAGATGCAAGGAGTTGCAGATGCAAGGAGTTTCACAAACTGGATTAACTAATCGAGGGTTCAAAGCTTCTGATGCTGTGAATAGAAGTACAACATCAATTGCTCTAATTCCTGAATATGGTCGCGGAATTTCCAGGCCTATCAAGCAGCCTAAGGATGTTCTTTTTCCTTATGATGATTTTGTCAAATTGTTTAACTGGGACAAGCCAGGATTTCCTCCACGTGGACTGTTAAATTGTGGAAACAGCTGTTTTGCAAATGTGGTTCTCCAATGTCTCTCTTTCACGAGGCCACTTATTGCCTACCTATTGGAGAAGGGGCACCGCAGTGAATGCTGTCATAACGATTGGTGCTTTCTATGTGAATTTGAAACCCATGTTGCAAGGGCAAGGCTAAGTTCTCAAGCATTTTCTCCAATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACACTGGGTTATGGAAAACAAGAGGATGCTCACGAGTTCATGAGGTTTGCTATTGATGCTATGCAGTCTGTTTGCCTTGATGAATTTGGTGGAGAAAGGGCTGTTCCTCCCAAGCATCAGGAAACAACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACCGAGTGTGAGAAGAATTCAAATCAATATGAAAATATGATGGACTTGACAGTCGAAATTCACGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGCTAAAGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAGGGTTATGTCAAGGCATGGAAACGTCTCACAGTTAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAACTTTCCCGGAGACTTTAGACCTTAGCCCTTACATGAGTGAAGTTGGAGATGGATCTGATATTTATAAGCTATATGCTGTTGTAGTACATATTGACATGTTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCTGTGGAAACTGGTATAGAATAGATGATTGGAAGGTCCTGAGAGTGGAGTTGGAAGAGGTGCTTTCTCAGGGTGCATATATGCTGTTGTATAGCAGGTATGCTTGTGACCATGAGTTAAAGAGGCGACTCTCCTGTCTTTCATGA 1530 0.4405 MLVSGVSSSSWDLKWLLQFVFSAFVLAMGLHALVKNTASKYFEVEAPFEGEQQQQQQHNHNHSMPGLLMDDSLCAVCRNPGSKKCSRCKSVRYCAAANLSSQACQQAHWKSEHKTRCKELQMQGVSQTGLTNRGFKASDAVNRSTTSIALIPEYGRGISRPIKQPKDVLFPYDDFVKLFNWDKPGFPPRGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRSECCHNDWCFLCEFETHVARARLSSQAFSPMNILSRLPNIGGTLGYGKQEDAHEFMRFAIDAMQSVCLDEFGGERAVPPKHQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFCGNWYRIDDWKVLRVELEEVLSQGAYMLLYSRYACDHELKRRLSCLS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00679 509 FunFam Ubiquitin carboxyl-terminal hydrolase 15 183 502 - -
Spst9g00679 509 Pfam MYND finger 74 117 IPR002893 -
Spst9g00679 509 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 190 205 IPR018200 GO:0004843|GO:0006511
Spst9g00679 509 Gene3D Cysteine proteinases 185 504 - -
Spst9g00679 509 Pfam Ubiquitin carboxyl-terminal hydrolase 190 492 IPR001394 GO:0004843|GO:0016579
Spst9g00679 509 SUPERFAMILY Cysteine proteinases 185 495 IPR038765 -
Spst9g00679 509 ProSiteProfiles Zinc finger MYND-type profile. 74 117 IPR002893 -
Spst9g00679 509 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 62 494 - -
Spst9g00679 509 SUPERFAMILY HIT/MYND zinc finger-like 71 120 - -
Spst9g00679 509 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 189 495 IPR028889 -
Spst9g00679 509 CDD Peptidase_C19E 188 493 - -
Spst9g00679 509 Gene3D - 53 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00679 Spst-Chr9 5892230 5896070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00679 12 494 Miscellaneous Gene Families AT4G31670 64.182 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00679 K11855 - gmx:100817913 862.833