Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00648 ATGTTTTTGAATGCTGGTAAATCCAAGGCATCTGATGACGAACATGGGGATTATGACGATCTTCAATATTCGTCTATTCGATCCAACGATGATACTTTGAGGTTGATGTCTTCTGGTGAGGAGAGTAACTTTGATGAAGGAGACCACAATAACAACGCAAATGTAGATGATCTAGTCAGCAAGATGGATCTTACGGATGATTTATTGCACATGGTTTTCTCCTTTTTGGATCATTCCAATCTCTCCAAAGCTGCCAGGGTTTGTAAGCAGTGGCGAGCTGCTAGTGCTCATGAAGACTTCTGGAAGAGTTTGAATTTTGAAGATCGTAACATATCTGTTGAGCAATTCGAGGACATCTGCAGGCGTTATCCTAATATCACAGCCCTCCGCATTTCCGGTCCTTCCTCTAACCAGCTTGTCATGAAGGCAGTCTCTTCGTTAAGAAATCTTGAGGCTTTAACATTGGGAAGAGGAAATATAATGGATAGTTTTTTCCATGCTTTGGCTGATTGTTCTATGTTGAAGAGACTGAGCATCAATGAAGCTGTACTTGGCAGTGGTATTCAGGAAATAACAGTTAATCACGACAGGCTGTGTCATCTCCGGTTGACAAAGTGCCGCATGATGCGCTTAGCAGTCAGGTGCCCACAACTTGAAACTATGTCCTTGAAGCGCAGTAACATGGCTCAGACTGTACTCAACTGCCCCTTGTTGCAAGAGCTTGATTTAGGCTCTTGCCACAAACTTCCTGATTCTGCTATTCGTTCAGCTGTTACTTCATGCCCGCAATTAGTTTCTTTGGATATGTCCAATTGCTCGTGTGTTAGTGACGAAACATTAAGGGAAATAGCCCTGAATTGTGCCAACCTTAGTTTTCTTGATGCATCTTACTGCCCAAATGTATCCTTGGAGACTGTTAGACTGCCAATGTTAACAGTTCTGAAGCTTCACAGTTGTGAGGGCATCACTTCAGCTTCAATGGCTGCGATAGCTTATAGTTACATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTATTGACATCAGTGTCTTTGGAGCTTCCCCGCTTGCAGAACATTAGATTGGTTCATTGTCGCAAATTTGCCGATTTGAACTTGATGACCCTAATGCTGTCTTCTATTCTGGTGTCCAATTGCCCTGTGCTCCATCGTATCAACATCACATCAAATTCACTTCAAAAATTAACAATACCAAAGCAGGACAGTTTAACAACATTGGCGTTGCAATGCGAATCTTTACAAGAAGTGGATCTCTCCGAGTGTGAATCTTTGAATAACTCTGTATGCAATGTCTTTAATGATGGTGGAGGCTGTCCAGTGTTGAAATCGTTAGTTCTTGATAATTGTGAGAGTTTGACATCGGTTCAATTCATCAGTACCTCTTTAATCTGCCTTTCACTTGGTGGCTGTCGGGCAATAACTAATCTTGATCTCACATGCCCTAATCTAGAGAAACTTATGTTGGATGGTTGTGATCATTTGGAGAGAGCGTCATTTTGTCCTGTTGGTCTTTCATCCCTCAATTTAGGAATATGTCCAAAATTGAGCACACTCAGCATCGAAGCACCTTATATGGTTTCACTTGAGTTGAAAGGATGTGGTGTACTATCCGAAGCATTCATTAATTGTCCACTCTTAACATCTCTCGATGCTTCCTTTTGCAGCCAACTAACTGATGACTGCTTGTATGCTACAACGGTCTCATGCCCACTAATTGAATCATTGATATTGATGTCATGCTCATCAATTGGTTCAGATGGTCTTCGATCTCTATATTGCCTTCCAAATTTGACTGTTCTTGACTTATCATACACTTTCTTGGTGAACTTGCAGCCTGTTTTTGATTATTGTTTACAACTAAAGGTGTTAAAGCTGCAAGCATGCAAATATCTCACTGGCACATCACTTGAACCTCTTTACAAAGGAGGTGCTTTACCAGCACTTCAGGAGTTGGATTTGTCTTATGGAACTTTCTGTCAGTCAGCCATAGACGAGCTTCTTGCATGCTGCACAAACCTCACTCATGTGAGCTTGAATGGCTGTTTGAATATGCATGATTTGAATTGGGGATGCAATTGCGGGCAGAGTACCAACTTACCTACTGTAGACACCTTATCCAGGGCAAGTTCTAATGAGAATGTCCCTGAATCAAGTGAGCAATCTGCTCGCGTATTGCAAAACCTCAATTGTGTTGGATGTCCGAATATTAGGAAGGTTATCATTCCATTGAGGGCAAATTGTTGTCATTTGTTATTTTTAAACCTTTCGCTCTCTGCAAATTTGAAAGAGGTTGATGTTACTTGTCTCAATCTATGCTTTCTTAATTTAAGCAATTGTTCCTCTTTGGAAATTTTGAAGCTAGAGTGTCCAAGATTGACTAGTCTATTCCTTCAGTCTTGCAATGTTGACGAGGAAGCTGTTGAAGCTGCTATATCAAAATGCACTATATTGGAGACTCTTGATGTTCGCTTTTGTCCAAAGATAAGTTCAATGAGCATGGGAAGATTACGTACAATTTGTTCGAGTTTGAAGCGTATATTCAGCAGTTCGTCAAGTCTGTTACCTTGA 2589 0.4106 MFLNAGKSKASDDEHGDYDDLQYSSIRSNDDTLRLMSSGEESNFDEGDHNNNANVDDLVSKMDLTDDLLHMVFSFLDHSNLSKAARVCKQWRAASAHEDFWKSLNFEDRNISVEQFEDICRRYPNITALRISGPSSNQLVMKAVSSLRNLEALTLGRGNIMDSFFHALADCSMLKRLSINEAVLGSGIQEITVNHDRLCHLRLTKCRMMRLAVRCPQLETMSLKRSNMAQTVLNCPLLQELDLGSCHKLPDSAIRSAVTSCPQLVSLDMSNCSCVSDETLREIALNCANLSFLDASYCPNVSLETVRLPMLTVLKLHSCEGITSASMAAIAYSYMLEVLELDNCSLLTSVSLELPRLQNIRLVHCRKFADLNLMTLMLSSILVSNCPVLHRINITSNSLQKLTIPKQDSLTTLALQCESLQEVDLSECESLNNSVCNVFNDGGGCPVLKSLVLDNCESLTSVQFISTSLICLSLGGCRAITNLDLTCPNLEKLMLDGCDHLERASFCPVGLSSLNLGICPKLSTLSIEAPYMVSLELKGCGVLSEAFINCPLLTSLDASFCSQLTDDCLYATTVSCPLIESLILMSCSSIGSDGLRSLYCLPNLTVLDLSYTFLVNLQPVFDYCLQLKVLKLQACKYLTGTSLEPLYKGGALPALQELDLSYGTFCQSAIDELLACCTNLTHVSLNGCLNMHDLNWGCNCGQSTNLPTVDTLSRASSNENVPESSEQSARVLQNLNCVGCPNIRKVIIPLRANCCHLLFLNLSLSANLKEVDVTCLNLCFLNLSNCSSLEILKLECPRLTSLFLQSCNVDEEAVEAAISKCTILETLDVRFCPKISSMSMGRLRTICSSLKRIFSSSSSLLP 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00648 862 Gene3D Ribonuclease Inhibitor 308 465 IPR032675 -
Spst9g00648 862 Gene3D Ribonuclease Inhibitor 615 716 IPR032675 -
Spst9g00648 862 Gene3D Ribonuclease Inhibitor 56 307 IPR032675 -
Spst9g00648 862 Gene3D Ribonuclease Inhibitor 466 614 IPR032675 -
Spst9g00648 862 FunFam F-box/LRR-repeat protein 15 56 305 - -
Spst9g00648 862 Gene3D Ribonuclease Inhibitor 766 861 IPR032675 -
Spst9g00648 862 SMART fbox_2 64 104 IPR001810 GO:0005515
Spst9g00648 862 FunFam F-box/LRR-repeat protein 15 467 615 - -
Spst9g00648 862 SUPERFAMILY L domain-like 383 562 - -
Spst9g00648 862 Pfam F-box-like 66 106 IPR001810 GO:0005515
Spst9g00648 862 SUPERFAMILY RNI-like 86 351 - -
Spst9g00648 862 FunFam F-box/LRR-repeat protein 15 307 466 - -
Spst9g00648 862 FunFam F-box/LRR-repeat protein 15 isoform C 713 856 - -
Spst9g00648 862 SMART LRR_CC_2 308 333 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 624 649 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 487 512 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 417 441 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 796 820 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 576 601 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 821 852 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 445 475 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 354 379 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 550 575 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 261 286 IPR006553 -
Spst9g00648 862 SMART LRR_CC_2 235 260 IPR006553 -
Spst9g00648 862 SUPERFAMILY F-box domain 63 94 IPR036047 GO:0005515
Spst9g00648 862 MobiDBLite consensus disorder prediction 1 23 - -
Spst9g00648 862 ProSiteProfiles F-box domain profile. 58 104 IPR001810 GO:0005515
Spst9g00648 862 PANTHER OS10G0396666 PROTEIN 49 859 - -
Spst9g00648 862 FunFam F-box/LRR-repeat protein 15 617 702 - -
Spst9g00648 862 SUPERFAMILY L domain-like 542 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00648 Spst-Chr9 5661438 5666578 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00648 - - vum:124826181 1494.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00648 9 5661438 5666578 Spst9g00648 9 5661438 5666578 ECH