Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00639 ATGGCTCAGCCATTTGGAAAAGCCATAGCAAAACCACCACCTTCTTCTTCTTCTTCCTCCACAATTCCAATTCCAAATCTCTCCCTGTTAACCTCCATCGCCTCAATCCTTCAAAACCTAAATCCCAAAATCCCAGATTTCTCACCCCTCATTCAATTCTCCCCTTACCTCACTCCAAACTTGGTCATTCACGTGATCAAGAACCAAAAGAATCCCCACCACGCGCTTCACTTCTTCAACTGGGCCTCCAACCCCAACCCCAACCCTAACAACTACTCCCACACCCCCTTCTGCTACGCCGCCATCACCGACCTCTTGCTCTCCCACTCCCTCTTCTCCACAGCCTACTCCCTCCTCCGTCACTCCAACAAACTCTCTGACTCCCTCATCTGCAAGTTCATCAACGCGCTCGGCCACCGCGGCGATATCAGGGGCGCCATTCACTGGTTCCACAAAGCCAAAAACTTGGGACGAGGACATTGCGTCTACTCATGCAACGCCATCTTGGGCGTGCTCGTCAGGGCCAACCGAGTCAATATTGCCAAGGCCATCTACGATCAGGTCCTCGCAAAAGCTGTGGTGGAACCCGATGTTTACACTCACACCACCATGATTCGTGGGTTTTGCAAAGTGGGCATGGTCGACAGTGCGATCAAGGTGTTCGACGAAATGCGCTGCGAACCCAATATAGTTACTTACAACACGTTGATCCACGGGTTTTGTAAGAGAGGTCAGATGGAGGGTGCCAGGTGGATTTTTGACAAATTGATCGAGAGTAAGAATTGTGCGCCGGATGCGTTGAGTTTCACCACTTTGATTTATGGGTATTCGAAGAGGGGTGAATTCCAAAAGGCGCTGGAGTGTCTGAAGGAGATGGTGGAACGAGGATGTTCTCCGAATGTTGTTACCTACAATACATTGATTGAATGTCTTTGTTTGAGCGGAGAAGTGGACGAAGCAAAGAAAATGATGAGTAGGATGCGGTTGAATGGTTTGAAAGACAATGTCGCCACAAACACTAGCTTGTTGAAGGGGTTGTGTATTGTGGGAAAGTCTGATGAAGCTGTCAAGCATTTGAGGGAAATGGTTAGTCGCGGGATGAAGCCGGATGTGAAAGCGTATGGGGTTGTTGTGAATGAGTATTGCAAGATTAGAAAACCAAGAGAAGCAGTGTCACTTCTCAGAGAAATGGTGGCGAGGGGTGTTAAGCCAAGTGTGTCAAGCTTCAATGCAGTGTTTAGAGTTCTTGTGGATGAGTGGAAGATTGATGAAGGAGTTATTCTTTTGAAGCAGATGAGTCAGATGGGATGCTCACCCAATTTCTTATCTTATTGCATAGTTATATGTGGTCTTTGTAAAGTGAAGGGTAGGATGCAGGCAGTTGAAGAGCTTGTTTCGGACATGCTTCAGAATGGACATAACCTGGATGCCACTATGTATAACTGCTTACTTGGCGGATACTGTGACGACGGGGATGAAGAAATGGCACTAAAGACGTTCTATGACATTAGGGACAAGAAGTTTTTTATCAACCAAGACATTTTCTGCACTTTTGTGAAGATGTTGTGTGCAAAGGGAAAATTGAAAGAGGCGGAGACAGTGTTTGAGGAGATGCTTGTGCAGGAGATTCCAGTTAAGCGGAAAGCTGAGGCTAAGGCAACAGAGGAACAATAA 1674 0.4707 MAQPFGKAIAKPPPSSSSSSTIPIPNLSLLTSIASILQNLNPKIPDFSPLIQFSPYLTPNLVIHVIKNQKNPHHALHFFNWASNPNPNPNNYSHTPFCYAAITDLLLSHSLFSTAYSLLRHSNKLSDSLICKFINALGHRGDIRGAIHWFHKAKNLGRGHCVYSCNAILGVLVRANRVNIAKAIYDQVLAKAVVEPDVYTHTTMIRGFCKVGMVDSAIKVFDEMRCEPNIVTYNTLIHGFCKRGQMEGARWIFDKLIESKNCAPDALSFTTLIYGYSKRGEFQKALECLKEMVERGCSPNVVTYNTLIECLCLSGEVDEAKKMMSRMRLNGLKDNVATNTSLLKGLCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCKIRKPREAVSLLREMVARGVKPSVSSFNAVFRVLVDEWKIDEGVILLKQMSQMGCSPNFLSYCIVICGLCKVKGRMQAVEELVSDMLQNGHNLDATMYNCLLGGYCDDGDEEMALKTFYDIRDKKFFINQDIFCTFVKMLCAKGKLKEAETVFEEMLVQEIPVKRKAEAKATEEQ 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 264 IPR002885 -
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 227 IPR002885 -
Spst9g00639 557 Pfam PPR repeat family 264 312 IPR002885 -
Spst9g00639 557 Pfam PPR repeat family 404 453 IPR002885 -
Spst9g00639 557 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 58 397 - -
Spst9g00639 557 Pfam PPR repeat 226 255 IPR002885 -
Spst9g00639 557 Pfam PPR repeat 194 225 IPR002885 -
Spst9g00639 557 Gene3D Tetratricopeptide repeat domain 469 542 IPR011990 GO:0005515
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Spst9g00639 557 MobiDBLite consensus disorder prediction 1 21 - -
Spst9g00639 557 Gene3D Tetratricopeptide repeat domain 118 244 IPR011990 GO:0005515
Spst9g00639 557 Gene3D Tetratricopeptide repeat domain 351 463 IPR011990 GO:0005515
Spst9g00639 557 Gene3D Tetratricopeptide repeat domain 245 350 IPR011990 GO:0005515
Spst9g00639 557 NCBIfam pentatricopeptide repeat 302 332 IPR002885 -
Spst9g00639 557 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
Spst9g00639 557 NCBIfam pentatricopeptide repeat 340 371 IPR002885 -
Spst9g00639 557 NCBIfam pentatricopeptide repeat 514 543 IPR002885 -
Spst9g00639 557 NCBIfam pentatricopeptide repeat 231 266 IPR002885 -
Spst9g00639 557 NCBIfam pentatricopeptide repeat 479 511 IPR002885 -
Spst9g00639 557 NCBIfam pentatricopeptide repeat 268 301 IPR002885 -
Spst9g00639 557 NCBIfam pentatricopeptide repeat 199 228 IPR002885 -
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Spst9g00639 557 Pfam PPR repeat 479 507 IPR002885 -
Spst9g00639 557 Pfam PPR repeat 515 539 IPR002885 -
Spst9g00639 557 Pfam PPR repeat 373 402 IPR002885 -
Spst9g00639 557 Pfam PPR repeat 340 366 IPR002885 -
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Spst9g00639 557 SUPERFAMILY HCP-like 135 333 - -
Spst9g00639 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 475 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00639 1 543 Glycosyltransferase AT1G05670 23.953 1.55e-46 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00639 - - gmx:100802054 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00639 9 5569226 5570899 Spst9g00639 9 5569226 5570899 ECH