Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00627 ATGAAAATTAAGTCACTTGGTGTCCAAATTAACTTTAAGGATATGCTTGGGAATCTTTTCCGCCCCTTTATTGGCTATAAGGATATAAGAGTTGTTCACAAGGAGCCTAGACGTAGTGGAGACAAGGCTATGACTTTGTGTTTTGTGGAGTTTGTTGACTCCAAATGTGCTCTCACTGCGCTGGAAGCCCTGCAAGTGTAA 201 0.4179 MKIKSLGVQINFKDMLGNLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDSKCALTALEALQV 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00627 66 Gene3D - 3 66 IPR012677 -
Spst9g00627 66 SUPERFAMILY RNA-binding domain, RBD 13 65 IPR035979 GO:0003676
Spst9g00627 66 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 65 IPR000504 GO:0003723
Spst9g00627 66 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 14 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00627 Spst-Chr9 5480849 5486270 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00627 - - gmx:100809186 100.908