Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00600 ATGGAACGTGCACGGAGACTAGCAAATAGGACAATTCTGAAGAGGCTGCTTTCATCCACGAAGGCTCATTCCCATTCACGACGTGTGTCTTATGTTTCTCATTCCTTTGCAAGAGTCAAATCGGAGAATTTGATCGGAAACAATAGACACCTTTCATGCAATGTAACATCTCGATCCATTTCAGTGGAGGCACTCAAGCCCAGCGATACGTTCCCTCGGCGCCACAACTCTGCCACTTCAGATGAACTAATCAACATGGCCAAGACATGCGGCTTCGATAATCTCAACTCCCTGATCGACGCCACCATTCCCAAATCCATCCGTCTGAAAGACATGTCGTTCAACATCTTCAACGAGGGACTGACGGAGGCCGAAATGATGTTGCACATGAAGAGCTTAGAATCAAAGAACAAATGCTTCAAGTCATACATCGGGATGGGGTACTACAACACGCACGTGCCACCCGTGATCTTGCGGAACATCATGGAGAACCCTGCGTGGTACACTCAGTACACTCCCTACCAGGCTGAGATATCTCAGGGTCGCCTCGAGTCCCTCATGAATTACCAAACCATGGTCGCAGATCTCACCGCTCTTCCGATGTCCAACGCCTCGTTGCTCGATGAAGGAACTGCGGCTGCTGAAGCAATGACGATGTGTAAGAACATTCACAAAGGGAAGAGGAAGACCTTTATCATAGCCAATAATTGTCACCCTCAAACTATTGACATTTGCATGACTAGAGCAACTGGTTTCGGGATTAAGGTTGTTGCTGTGGATGTTAAGGATGTGGATTACGGATCCCTTGATGTTTGTGGAGTTCTTGTTCAGTATCCGGGGACTGAGGGTGACGTTTTGGACTATGGGGAGTTTGTTAAGGAGGCTCATGCTCATGGAGTTAAGGTTGTTATGGCGACTGATTTGTTGGCTCTAACTATGTTGAAGCCTCCTGGAGAACTTGGGGTGGATATTGTTGTTGGGTCTACTCAGAGGTTTGGGGTTCCAATGGGTTATGGGGGTCCACATGCTGCGTTCCTGGCCACGTCACAAGAGTATAAAAGGATGATGCCTGGAAGGATCATTGGGGTCAGTGTCGATTCTTGTGGAAACTCGGCTTTGAGAATGGCCTTGCAAACTAGGGAGCAGCATATCCGAAGGGACAAGGCCACCAGCAACATTTGTACTGCTCAGGCATTGCTTGCAAACATGGCTGCTATGTATGCTGTTTATCATGGACCTGAAGGACTTAAAACCATTGCCCAACGGGTTCATGGTCTTGCTGGGGTGTTTGCCCTGGGATTGAAGAAACTTAGTACAGTGGAAGTTCAGGACCTTCCCTTCTTTGACACTGTGAAAATTAAGACCACCAATGCTCAAGCAATTGCTGACGTTGCTCGCAAAAGTGAAATAAATTTGCGGGTTGCTGATGGGAACACAATCACTGTTGCTTTTGATGAAACAACAACCTTGGAGGATGTTGATAACCTTTTCAAAGTTTTTTCCAATGGCAAGCATGTATCCTTCACAGCTGCGTCTCTTGCACCAGAAGTTGAGACTGCACTTCCTTCTGGACTAATTAGGAAGAGTCCTTATCTAACACACCCTATCTTTAACATGTACCACACTGAGCATGAAATGCTCAGGTACATTCATAGGCTACAGTCGAAAGATCTTTCTTTGTGCCATAGTATGATCCCGCTGGGATCTTGTACAATGAAGTTGAATGCAACCACTGAAATGATTCCTGTGACATGGCCCAACTTTGCTAACATTCACCCTTTTGCGCCAATTGAACAGGCTCAAGGTTATCAGGAAATGTTCAAAAATTTGGGTAACATGTTGTGTACAATCACTGGGTTTGACTCCTTCTCTTTGCAACCTAATGCGGGTGCCGCTGGAGAATACGCTGGATTGATGGTTATTCGTGCATATCATTTGGCAAGAGGAGACCACCACCGCAATGTTTGCATTATCCCAGTCTCAGCACATGGTACAAATCCTGCCAGTGCTGCTATGTGTGGAATGGAAATTGTATCTATCGGAACTGATGCCAAGGGAAACATCAATATTGAAGAGTTAAGGAAGGCTGCGGAAACACATAAGGACAACTTATCTACACTTATGGTAACATATCCTTCAACACATGGTGTTTACGAAGAAGGAATTGATGAGATATGCAAGATTATTCATGATAACGGGGGACAAGTATATATGGATGGTGCTAACATGAATGCACAGGTGGGACTTACAAGCCCTGGTTGGATTGGAGCAGATGTTTGCCATCTGAATCTCCACAAGACATTTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGAGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGTGGTTCCAACTGGTGGCATTCCTGCCCCTGACAAGACACAACCAGTAGGTACCATTTCTGCAGCACCATGGGGCTCAGCTCTGATATTGCCTATCTCATACTCTTACGTAGCCATGATGGGTTCTAAAGGACTCGCCGAAGCGTCAAAAACAGCCATTTTGAAGGCAAACTATATGGCAAAACGATTGGAGAATCATTATCCTGTTCTTTTCCGTGGAGCGAATGGAACAGTTGCTCATGAATTCATTATTGACTTAAGAGGCTTTAAGAACTCTTCTGGGATAGAAGCTGAAGATGTTGCAAAGCGACTTATGGACTATGGCTTTCACGGACCGACAATGTCATTTCCTGTGCCTGGCACACTTATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTTCATTCGGCAAGAAATTGCTGAGATTGAGAATGGAAAGGCTGGCATCAACAACAATGTACTAAAGGGTGCCCCTCACCCACCATCACTGCTCATGGAAGATGCATGGACAAAACCTTACTCTCGAGAATATGCAGCATTCCCTGCTTCCTGGCTTCGTGTTTCTAAGTTCTGGCCTTCCACAGGACGTATTGATAATGTGTACGGTGACCGGAACTTGGTTTGCACCCTTTCCCCAGAATCAAAGGTTTATTGA 3072 0.4574 MERARRLANRTILKRLLSSTKAHSHSRRVSYVSHSFARVKSENLIGNNRHLSCNVTSRSISVEALKPSDTFPRRHNSATSDELINMAKTCGFDNLNSLIDATIPKSIRLKDMSFNIFNEGLTEAEMMLHMKSLESKNKCFKSYIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEISQGRLESLMNYQTMVADLTALPMSNASLLDEGTAAAEAMTMCKNIHKGKRKTFIIANNCHPQTIDICMTRATGFGIKVVAVDVKDVDYGSLDVCGVLVQYPGTEGDVLDYGEFVKEAHAHGVKVVMATDLLALTMLKPPGELGVDIVVGSTQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSCGNSALRMALQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFALGLKKLSTVEVQDLPFFDTVKIKTTNAQAIADVARKSEINLRVADGNTITVAFDETTTLEDVDNLFKVFSNGKHVSFTAASLAPEVETALPSGLIRKSPYLTHPIFNMYHTEHEMLRYIHRLQSKDLSLCHSMIPLGSCTMKLNATTEMIPVTWPNFANIHPFAPIEQAQGYQEMFKNLGNMLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMEIVSIGTDAKGNINIEELRKAAETHKDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGWIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPDKTQPVGTISAAPWGSALILPISYSYVAMMGSKGLAEASKTAILKANYMAKRLENHYPVLFRGANGTVAHEFIIDLRGFKNSSGIEAEDVAKRLMDYGFHGPTMSFPVPGTLMIEPTESESKAELDRFCDALIFIRQEIAEIENGKAGINNNVLKGAPHPPSLLMEDAWTKPYSREYAAFPASWLRVSKFWPSTGRIDNVYGDRNLVCTLSPESKVY 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00600 1023 NCBIfam aminomethyl-transferring glycine dehydrogenase 75 1015 IPR003437 GO:0004375|GO:0006544
Spst9g00600 1023 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 154 414 - -
Spst9g00600 1023 CDD GDC-P 543 938 IPR020581 GO:0004375|GO:0006546
Spst9g00600 1023 FunFam Glycine cleavage system P protein 407 496 - -
Spst9g00600 1023 CDD GDC-P 123 500 IPR020581 GO:0004375|GO:0006546
Spst9g00600 1023 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 831 969 - -
Spst9g00600 1023 Coils Coil 690 710 - -
Spst9g00600 1023 SUPERFAMILY PLP-dependent transferases 74 499 IPR015424 -
Spst9g00600 1023 Gene3D Aspartate Aminotransferase, domain 1 834 969 IPR015422 GO:0003824
Spst9g00600 1023 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 582 821 - -
Spst9g00600 1023 SUPERFAMILY PLP-dependent transferases 537 1017 IPR015424 -
Spst9g00600 1023 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 65 1022 IPR003437 GO:0004375|GO:0006544
Spst9g00600 1023 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 56 1021 IPR020581 GO:0004375|GO:0006546
Spst9g00600 1023 Gene3D - 155 414 IPR015421 GO:0003824
Spst9g00600 1023 Gene3D - 582 833 IPR015421 GO:0003824
Spst9g00600 1023 Pfam Glycine cleavage system P-protein 519 793 IPR020581 GO:0004375|GO:0006546
Spst9g00600 1023 Pfam Glycine cleavage system P-protein 74 500 IPR020581 GO:0004375|GO:0006546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00600 Spst-Chr9 5293537 5298914 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00600 K00281 - gmx:100795673 1847.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00600 9 5293537 5298914 Spst9g00600 9 5293537 5298914 ECH
Spst8g02342 8 34520155 34526476 Spst9g00600 9 5293537 5298914 PCT