Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00593 ATGGCACTTCTCAGTCGAGCCTCCTCACGCTTCCCTCAACTGCACTCCCATCAACGGGTACTCTCCATCCACACAACCCTCCCATCTCTCAACGCATCCACGCCCACGCCCACACCATATGCTCCGCCACCGCCTCCATCCGTTTCCTCTCCCGTCGGGGTCTCCAAGGCGCCCGAGTTCGTCATCTCTAAGGTCGACGATCTGTTGAACTGGGCCCGCCGCGGCTCCATCTGGCCCATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAAATGATGCACACCGGCGCCGCCCGCTACGATCTCGACCGTTTCGGCATCATTTTCAGGCCCAGCCCTCGCCAGTCTGACTGCATGATCGTCGCCGGCACTCTCACGAACAAGATGGCTCCCGCTCTTCGCAAGGTTTATGACCAAATGCCTGAACCTAGATGGGTCATCTCAATGGGAAGTTGTGCTAACGGAGGAGGATACTACCACTACTCTTACTCCGTGGTTCGGGGATGTGACAGAATTGTTCCTGTTGACATATATATTCCAGGCTGCCCTCCAACTGCTGAAGCCTTGCTGTATGGACTCCTCCAACTGCAGAAAAAGATCAATAGGCGCAAAGACTTCCTCCATTGGTGGACAAAGTGA 636 0.566 MALLSRASSRFPQLHSHQRVLSIHTTLPSLNASTPTPTPYAPPPPPSVSSPVGVSKAPEFVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00593 211 MobiDBLite consensus disorder prediction 35 51 - -
Spst9g00593 211 SUPERFAMILY HydA/Nqo6-like 59 203 - -
Spst9g00593 211 Gene3D - 57 211 - -
Spst9g00593 211 NCBIfam NADH-quinone oxidoreductase subunit B 60 201 IPR006138 GO:0008137|GO:0048038|GO:0051539
Spst9g00593 211 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 46 200 IPR006138 GO:0008137|GO:0048038|GO:0051539
Spst9g00593 211 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 167 183 IPR006138 GO:0008137|GO:0048038|GO:0051539
Spst9g00593 211 FunFam NADH-quinone oxidoreductase subunit B 2 52 211 - -
Spst9g00593 211 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 86 195 IPR006137 GO:0051536
Spst9g00593 211 PANTHER NADH DEHYDROGENASE 55 210 - -
Spst9g00593 211 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00593 Spst-Chr9 5271260 5273539 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00593 K03940 - gmx:100802267 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00593 9 5271260 5273539 Spst9g00593 9 5271260 5273539 ECH
Spst8g02322 8 34213423 34214443 Spst9g00593 9 5271260 5273539 PCT