Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00590 ATGGCGGATGAAACTCACTATTCATCTCCCAACGACTCTGCGCCCCTCAAACGCAAGTATGATGACCAATCCTCCGACAGACCCACCGGCTTCTCCGCTGGCCCCGCCACCGGCATCGAGCTCGCCAAGCAGCGTGCTCAAGAAGTCGCAGCTCGCCTCCTTCTCAGCGGTGGTCCTCCTCCCCTCGACGCCAAGCGTCCCAAACCCGACAACGGTGCTCCTACCTCTGGCTTCGATTCTTTCGATGCGAAGCCTCAGTACTCGGCCATTCCTCCCGTCTCCTACAGTCACCAAGGTACTAGCAAGAAGATTGATATCCCTAACGGTAGGGTTGGTGTGATTATTGGCAAAGGTGGAGAGACCATTAAGTATCTCCAGTTGCAGTCTGGTGCCAAAATTCAAGTTACTCGCGATATGGACGCCGATCCTAATTCTGCTACTAGGACCGTTGAGCTTATGGGCACTCCCGAGGCAATTGCGTCTGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAATCTGGGGGTTCTGGCATTGTTGCTCGAAGACTGACTGGACAAGCTGGGTCGGATGAATTTGTCATGAGAATTCCGAATAATAAGGTTGGACTTATTATTGGTAAAGGAGGAGAAACCATAAAAAATATGCAAGCTTCTACTGGAGCACGGATTCAGGTGATACCTTTGCATCTTCCTCCAGGTGACACATCAACTGAAAGAACATTAAAAATTGATGGGACACCTGAGCAAATTGAGTCTGCAAAGGAGTTGGTTAATCAAATCATCAGTGGCGAGCCCAATGCTCTGGTGAGGGTTAGTGTCTATGGGACCATTGGTGACACCAACATGAAACCCTCTGTTGGTGTTCCCTCAGCATGCCCCGATATTTTGAGATACCATATGATGAATTGCCTTTTCAAGGCAATAAATATTGAATGCTTGTTTGCTTCTATGGTCTATGGTTTCTTTTGTACCCATTCAATTCGAATAGGGAAAGGGTGTGCTTCTGCTGGAGTAACTCAGTTTTATCACGAAACAGTACGGTATAATCGTCTAAGAAATCCTGCAATGTCTGGTGGTTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCCCCTGCTCCAATGCAGCAACCTGGTTATGGCTACGTGCAACCTGGAGCATATTCTGGTCCATCACCTCAGTATAACATGCCTCAACCACCATGTGCTGGCTATCCTCCCCAGCAACCAGGTGGATATTCCACCAGCTGGGACCAATCTTCTGCACCACCTCACCAACAGTCTACTCATACTGGAGGCTATGATTACTATAGTCAACAGCCACAGCAACCACAAAATCCTGGAGGGCCTGCACCTCCAGGGGATGGCTCTGCATACAATTACAGTCAACCACCTTCCTCTGGTTATAGCCAACCGGGACAGGGTTATGCTCAAGACAGTTATAATGCATATAATACACAATCTCAATCAGGGTATGGACAACCACCAACATATGATCAACAGCAAGGCTATGGCTCAGCTACTACTGGCTATGGTAGTGGGAGTAACCCAGCACAAGAGGGCCACACTGCGAGCTATGCATCGCAGGGAGATTCAGCCCAAGCTCCATCTTCCCAACCGACCAGCATGGCACAGCAAGGTTATCCTACCAGCCAACAGCCCAGCTCAAACACTGCCAACTACCCACCTCAGGGAACCCCTCAGTCAGGTTATGGGGTTCCGCCTACATCCCAAGCTGCTTATGGAAATCAACCACAGCCAGGTTATGGACCTGGTTATGGAGCTCCTCAATCGCAAAAACCAAGTGGCAATCCTCCTGTTTATGGACAGTCGCAGTCACCTAGTGCGGTAGGAGGCTATGGTCAGTCAACATATCCTGCGCAGCCTCCCCCATCCGGGTATACTCAATCCCAACCAGAATCGGGATCTCAGAGAGCACCACAGTCTGGTTATGTTGCAGGGCAACCAGGTTATGGTTCTCAAACATATGGTGCTCCTCAGGGTGGTCAGCCTGCTTATGGTCAGGCACCGCCTCCATACAGCAACAGTTCGTATGGTGCTGGTTATGCGCAGGGTCCTCCTTACACTGGTGATGGTAATTCGAGTGGGAATACTCAGCCTCCTCAGACTGCCGCTGCCAAAACTTCGCCTCAGAGTTGA 2178 0.5014 MADETHYSSPNDSAPLKRKYDDQSSDRPTGFSAGPATGIELAKQRAQEVAARLLLSGGPPPLDAKRPKPDNGAPTSGFDSFDAKPQYSAIPPVSYSHQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSATRTVELMGTPEAIASAEKLINEVLAEAESGGSGIVARRLTGQAGSDEFVMRIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKELVNQIISGEPNALVRVSVYGTIGDTNMKPSVGVPSACPDILRYHMMNCLFKAINIECLFASMVYGFFCTHSIRIGKGCASAGVTQFYHETVRYNRLRNPAMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGYVQPGAYSGPSPQYNMPQPPCAGYPPQQPGGYSTSWDQSSAPPHQQSTHTGGYDYYSQQPQQPQNPGGPAPPGDGSAYNYSQPPSSGYSQPGQGYAQDSYNAYNTQSQSGYGQPPTYDQQQGYGSATTGYGSGSNPAQEGHTASYASQGDSAQAPSSQPTSMAQQGYPTSQQPSSNTANYPPQGTPQSGYGVPPTSQAAYGNQPQPGYGPGYGAPQSQKPSGNPPVYGQSQSPSAVGGYGQSTYPAQPPPSGYTQSQPESGSQRAPQSGYVAGQPGYGSQTYGAPQGGQPAYGQAPPPYSNSSYGAGYAQGPPYTGDGNSSGNTQPPQTAAAKTSPQS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00590 725 ProSiteProfiles Type-1 KH domain profile. 99 166 - -
Spst9g00590 725 MobiDBLite consensus disorder prediction 356 725 - -
Spst9g00590 725 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 93 544 - -
Spst9g00590 725 MobiDBLite consensus disorder prediction 465 590 - -
Spst9g00590 725 Pfam KH domain 103 168 IPR004088 GO:0003723
Spst9g00590 725 Pfam KH domain 195 260 IPR004088 GO:0003723
Spst9g00590 725 SMART kh_6 190 264 IPR004087 GO:0003676
Spst9g00590 725 SMART kh_6 98 171 IPR004087 GO:0003676
Spst9g00590 725 Gene3D K Homology domain, type 1 193 266 IPR036612 GO:0003723
Spst9g00590 725 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 194 270 IPR036612 GO:0003723
Spst9g00590 725 ProSiteProfiles Type-1 KH domain profile. 191 259 - -
Spst9g00590 725 MobiDBLite consensus disorder prediction 1 83 - -
Spst9g00590 725 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 101 177 IPR036612 GO:0003723
Spst9g00590 725 MobiDBLite consensus disorder prediction 682 725 - -
Spst9g00590 725 MobiDBLite consensus disorder prediction 603 674 - -
Spst9g00590 725 MobiDBLite consensus disorder prediction 415 450 - -
Spst9g00590 725 Gene3D K Homology domain, type 1 94 189 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00590 Spst-Chr9 5250654 5255575 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00590 K13210 - gmx:100813135 508.449