Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00575 ATGGAAAACTTACTGACGATCGATGCAGGAAACCACTCTGAGACAATTAACCAGGGTTGCGTTTCCACTGAAGATGAAAGCATCATAACCAATCCCCAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCCCTACATGACTCCATGGGAGATGGGAAAATTCTTCCAAAGTCTGGTAAATTCTTTGCATCTGCAACAGAACGTACCCAAAGCTGGAACGGGATTCAGCAGGAGATCACTGGAAGAGTGCAGCGCAAGCTTATCTACGAAGTTACTGCATTAGTTCGGATATTTGGGAACAATGTCACCAGTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCCCCTGATCTTCGGGAGCAGTATATAAGCATTGCCAAAGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAATTCCTTCTAAATGGTTCCCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCCCCTCCAGGCACTGACATTCTTGTCAATACTTTGGTTATAAAACATGCACCTAAAACACCACCTTCAACACCCCCAGATTGTGAGATTGCTGCTTTTGGTGTTAACATAATTGAAAACAGTAATCTGGCCAATGGTACTGATGGATGGTTTCCACTTGGTAATTGTACTTTGAGCGTCGGAAGTAGTTCACCGCGTATAATCCCACCAATGGCAAGAGACTCCCTTGGGCCTCATGAATCCTTGAGTGGGCGCTACCTCCTTGTAACCAATCGCACACAAACATGGATGGGTCCTGCTCAGATGATCTCTGAGAAATTGAAACTCTTTCTAACTTATCAAGTATCTGCTTGGGTCAGGATCGGTTCTGCATCAACTGGGCCTCAGAATGTAAATGTTGCCCTTAGTGTTGATAATCAGTGGGTCAATGGGGGACAAGTTGAAGTTGCTGATGGCAGGTGGCACGAAATTGGTGGGTCTTTTAGAATTGAAAAGCAGCCATCTAAGGTTATGGTATATATTCAAGGCCCAGCTTCTGGTGTTGATTTGATGGTTGCTGGACTTCAAATTTTTGCTGTTGATAGACAAGCAAGGTTTAAATATTTGAGGAGACAGACAGACAAGATCCGTAAGCGTGATATTACCCTAAAATTCTCTGGGCTGGATTCAATTGGAAATCTTGGAACCTTGGTGAGAGTTAGACAAATACAAAATGATTTTCCCATAGGAACGTGCATTAGTAGAAACAATATTGACAATGAAGATTTTGCTGACTTCTTTGTGAAACATTTTAACTGGGCTGTTTTTGGGAATGAGTTGAAGTGGTATTGGACTGAGCCACAACAAGGTAATCTGAATTACAAGGATGCTGATGAAATGCTAGATTTATGTCAAAAGAACAAGATAGACACCAGGGGTCATTGTATTTTCTGGGACGTGGATGGCAATGTTCAACAATGGATCAAATCACTGAATAAAACTGATTTGATGACAGCTGTTCAAAATCGCTTGAATGGCTTATTGACTCGCTACAAAGGTAAGTTCCGACACTATGATGTCAACAATGAAATGTTGCATGGTTCCTTTTATCAGGATAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGACTGCACACCAACTAGACCCATCTGCTACCCTTTTTGTGAATGACTATCATATTGAAGATGGATGTGACACCAGATCATCCCCAGAAAAATACATTCAACATATTCTTGATTTGCAACAGCAAGGTGCCCCAGTTGGGGGAATAGGGATTCAAGGTCACATAGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCCCTTGATAAATTGGGGACTCTTGGTTTACCAATATGGTTTACTGAGCTTGATGTGTCTTCCACCAATGAGTATGTTAGAGCTGATGATCTAGAAGTTATGTTGCGGGAAGCTTTGGCACACCCTGCCATAGATGGTGTAATGCTCTGGGGATTTTGGGAGTTATTTATGAGCCGGGAAAATTCACACCTGGTGAATGCAGAAGGGGACCTCAATGAAGCTGGGAAAAGATTCCTTTCTCTCAAACAAGAGTGGTTGTCTCACAGCCATGGTTATGTTGATGAGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTGGAAATTGTGACCTTAGCAAAGAAAGTTTCTAAGACATTCGTTGTTGACAAGGGTGACTCCTCACTGGTGGTATCAATCGATGTTTAA 2226 0.4241 MENLLTIDAGNHSETINQGCVSTEDESIITNPQFDDGLNNWSGRGCKIALHDSMGDGKILPKSGKFFASATERTQSWNGIQQEITGRVQRKLIYEVTALVRIFGNNVTSSDVRATLWVQAPDLREQYISIAKVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPPPGTDILVNTLVIKHAPKTPPSTPPDCEIAAFGVNIIENSNLANGTDGWFPLGNCTLSVGSSSPRIIPPMARDSLGPHESLSGRYLLVTNRTQTWMGPAQMISEKLKLFLTYQVSAWVRIGSASTGPQNVNVALSVDNQWVNGGQVEVADGRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMVAGLQIFAVDRQARFKYLRRQTDKIRKRDITLKFSGLDSIGNLGTLVRVRQIQNDFPIGTCISRNNIDNEDFADFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDGNVQQWIKSLNKTDLMTAVQNRLNGLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQLDPSATLFVNDYHIEDGCDTRSSPEKYIQHILDLQQQGAPVGGIGIQGHIDSPVGPIVCSALDKLGTLGLPIWFTELDVSSTNEYVRADDLEVMLREALAHPAIDGVMLWGFWELFMSRENSHLVNAEGDLNEAGKRFLSLKQEWLSHSHGYVDEQGQFSFRGFSGTYNVEIVTLAKKVSKTFVVDKGDSSLVVSIDV 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00575 741 SUPERFAMILY Galactose-binding domain-like 196 356 IPR008979 -
Spst9g00575 741 Gene3D - 21 178 - -
Spst9g00575 741 Gene3D - 192 354 - -
Spst9g00575 741 SUPERFAMILY Galactose-binding domain-like 25 181 IPR008979 -
Spst9g00575 741 PANTHER GLYCOSYL HYDROLASE 184 733 IPR044846 GO:0004553|GO:0005975
Spst9g00575 741 Gene3D Glycosidases 389 695 - -
Spst9g00575 741 SMART glyco_10 435 685 IPR001000 GO:0004553|GO:0005975
Spst9g00575 741 Pfam Glycosyl hydrolase family 10 398 655 IPR001000 GO:0004553|GO:0005975
Spst9g00575 741 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 389 684 IPR001000 GO:0004553|GO:0005975
Spst9g00575 741 FunFam Endo-1,4-beta-xylanase A 390 692 - -
Spst9g00575 741 Pfam Carbohydrate binding domain 27 163 IPR003305 GO:0016798
Spst9g00575 741 Pfam Carbohydrate binding domain 198 341 IPR003305 GO:0016798
Spst9g00575 741 SUPERFAMILY (Trans)glycosidases 392 692 IPR017853 -
Spst9g00575 741 FunFam Glycosyl hydrolase family 10 protein 22 178 - -
Spst9g00575 741 ProSitePatterns Glycosyl hydrolases family 10 (GH10) active site. 612 622 IPR031158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00575 Spst-Chr9 5162811 5166587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00575 21 741 Glycoside Hydrolase AT1G58370 73.997 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00575 - - gmx:100801147 1425.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00575 9 5162811 5166587 Spst9g00575 9 5162811 5166587 ECH