Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00572 ATGATTCGAAGGCCTGTGTCCTTTCCCAGTTTAACGAGATTGCTTCTTCGGACTGGTTCTGCTTCTGCGTCGTCCAAGATCGGAACTCAAAATTGGTTTGCTTCTCAACCCAACCCTATTTACAGTGAGGATGAGTATGCTGACGTGGACTGGGACAGTCTTGGCTTTGGTTTGATGCCTACGGATTACATGTACATTAGTAAATGTTGTGAGGGCCAAAATTTTGGTGAAGGACAACTGAGTCGCTACGGGAACATTGAACTCAGTCCATCAGCTGGGGTCCTAAATTATGGGCAGGGATTATTCGAAGGCACAAAAGCATACAGAAAAGAAAATGGGCGCGTGCTACTCTTCCGTCCGGAACAAAATGGCATTCGCATGAAGATTGGTGCCGAAAGAATGTGCATGGCATCCCCTTCCATCGATAATTTTGTTCATGCTTTGAAACAAACTGTCTTGGCCAATAAACGTTGGATTCCTCCGCCCGGAAAAGGGTCGTTGTACCTTAGGCCTCTGCTCATAGGAACGGGTCCAGTTTTGGGTTTGGCTCCTGCATCTGAATACACATTCCTCATATATGCTTCCCCTGTTCGCAACTATTTCAAGGAGGGTTCGGCTCCGCTCAACTTGCTTGTAGAGGAGAACTTTGACCGTGCTTCTCGCCGCGGCACTGGAAACGTCAAAACCATTTCTAATTATGCACCGGTTTTGATGGCACAAACTAAAGCCAAGCAAAGAGGATTTTCAGATGTGCTGTACCTTGATTCAGCCACGAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGTATCGCAACTCCTGCTACCAATGGAACTATTCTTTCCGGAATTACCCGAAAGAGTGTCATTGAAATTGCTGGTGATCATGGCTATCAGGTAGAAGAGCGTGTTGTAGGCGTGGACGAATTGATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCTGTGGGTGTTGCTCCTGTTGGTAGTATCACATACCAGGATAAAAGGATGGACTATATAACAGGTTCTGGAACCATTTGTGAAGAGCTGAACAGCACCATTTCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGTTGGATTATTGAAGTCAATTAA 1146 0.452 MIRRPVSFPSLTRLLLRTGSASASSKIGTQNWFASQPNPIYSEDEYADVDWDSLGFGLMPTDYMYISKCCEGQNFGEGQLSRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGRVLLFRPEQNGIRMKIGAERMCMASPSIDNFVHALKQTVLANKRWIPPPGKGSLYLRPLLIGTGPVLGLAPASEYTFLIYASPVRNYFKEGSAPLNLLVEENFDRASRRGTGNVKTISNYAPVLMAQTKAKQRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCIATPATNGTILSGITRKSVIEIAGDHGYQVEERVVGVDELIEADEVFCTGTAVGVAPVGSITYQDKRMDYITGSGTICEELNSTISGIQTGTIEDKKGWIIEVN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00572 381 ProSitePatterns Aminotransferases class-IV signature. 264 293 IPR018300 GO:0003824
Spst9g00572 381 Gene3D - 208 380 IPR043132 -
Spst9g00572 381 Pfam Amino-transferase class IV 100 338 IPR001544 GO:0003824
Spst9g00572 381 Gene3D - 25 207 IPR043131 -
Spst9g00572 381 NCBIfam branched-chain-amino-acid transaminase 77 380 IPR005786 GO:0004084|GO:0009081
Spst9g00572 381 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 32 377 IPR036038 GO:0003824
Spst9g00572 381 CDD BCAT_beta_family 87 368 IPR033939 GO:0004084|GO:0009081
Spst9g00572 381 PANTHER AMINO ACID AMINOTRANSFERASE 36 381 IPR005786 GO:0004084|GO:0009081
Spst9g00572 381 FunFam Branched-chain-amino-acid aminotransferase 31 207 - -
Spst9g00572 381 FunFam Branched-chain-amino-acid aminotransferase 209 380 - -
Spst9g00572 381 PIRSF BCAT1 32 381 IPR005786 GO:0004084|GO:0009081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00572 Spst-Chr9 5132046 5139139 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00572 K00826 - gmx:100818776 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00572 9 5132046 5139139 Spst9g00572 9 5132046 5139139 ECH