Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00564 ATGTTGGACAACTACGTGCTTGGATGGATCGTATGCGCCACGCTGAGCATATTTGCGGTTCGCAATTTCGTTTTCGCGCAGAAGAAATGTTGCGCTTCGTCGGAGACCGACGCCGTTCTGTGCGCGGAAAACATCACCACTGCTGCCGGAGAATGCAGATCCTCGAACCGCGACGGCGAAGTTGACGTCCTAATTGTCGGAGCCGGTGTCGCGGGCTCCGCTCTCGCTTACACTCTCGGCAAGGATGGACGTCGAGTACTTGTCATTGAAAGAGATCTGAGCGAACCAGACAGAATAGTTGGAGAGTTGCTACAGCCTGGAGGCTATCTCAAGTTGATTGAGCTTGGACTTGAAGATTGCGTGGATAAAATTGATGCTCAACAAGTGTTTGGCTACGCTCTTTTCAAGGATGGAAAACGCACAAGACTCTCTTATCCGTTGGAAAAGTTTCACAAGGGTGTTGCTGGCAGAAGCTTTCACAATGGTCGTTTTATTCAAAGGATGAGAGAGAAGGCCGCCTCCCTTCCCAATGTACAACTGGAGCAAGGAACAGTTACTTCCCTACTTGAAGAAAAGGGAGTAATTAAAGGCGTGCGGTACAAAAGCAAGGATAATCAGGAATTATCAGCTAGTGCACCCCTTACCATTGTTTGTGATGGCTGTTTCTCAAACCTGCGTCGTTCTCTTTGTAATCCTAAGGTAGATGTGCCCTCTTGTTTCGTTGGCCTAGTTTTGGAGAATTGTGAACTTCCTTTTCCAAATCATGGCCATGTCATACTGGGAGATCCTTCGCCAGTTCTGTTCTATCCAATAAGTAGTACAGAAATCCGCTGTCTGGTTGATGTTCCTGGTCAGAAAGTCCCGTCTATTTCCAATGGTGAAATGGCAAAGTATTTGAAGACAGTGGTAGCCCCACAGGTTCCTCATGAGCTTCGTGACGCATTCATAGCTGCAGTGGACAAAGGCAGCATCAGGACAATGCCAAACAGAAGCATGCCAGCAGCTCCTTATCCTACTCCCGGAGCCCTGCTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACCGGTGGTGGCATGACTGTGGCATTATCTGATATAGTAGTGCTACGAAATCTTCTTAGGCCTTTGCGTGATCTGAATGATGCACCCAGCCTCTGCAAATACCTTGAATCATTCTATACCTTGCGCAAGCCTGTGGCGTCCACTATAAATACTTTGGCAGGAGCCCTTTACAAGGTCTTTTGCGCATCATCTGATCCAGCAAGGAAGGAAATGCGCCAGGCTTGCTTCGATTATCTTAGCCTTGGAGGTCTATTCTCGGAAGGGCCAGTCTCTCTGCTTTCCGGATTAAATCCTCGGCCCTTGAGTCTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTACTGCTACCATTTCCTTCACCTAAACGGATATGGATCGGACTTCGATTAATTTCTAGTGCATCTGGAATCATCATGCCAATAATTAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACCGTTCCAGCTTACTACCGAAATCCCCCGGCTGCTTAA 1578 0.4797 MLDNYVLGWIVCATLSIFAVRNFVFAQKKCCASSETDAVLCAENITTAAGECRSSNRDGEVDVLIVGAGVAGSALAYTLGKDGRRVLVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVDKIDAQQVFGYALFKDGKRTRLSYPLEKFHKGVAGRSFHNGRFIQRMREKAASLPNVQLEQGTVTSLLEEKGVIKGVRYKSKDNQELSASAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCELPFPNHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQVPHELRDAFIAAVDKGSIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPSLCKYLESFYTLRKPVASTINTLAGALYKVFCASSDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGLRLISSASGIIMPIIKAEGVRQMFFPATVPAYYRNPPAA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00564 525 Gene3D - 54 435 IPR036188 -
Spst9g00564 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 339 354 - -
Spst9g00564 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 354 370 - -
Spst9g00564 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Spst9g00564 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Spst9g00564 525 FunFam Squalene monooxygenase 2 55 435 - -
Spst9g00564 525 PANTHER SQUALENE MONOOXYGENASE 41 523 IPR040125 GO:0004506|GO:0016126
Spst9g00564 525 Pfam Squalene epoxidase 212 484 IPR013698 GO:0004506|GO:0016020|GO:0050660
Spst9g00564 525 SUPERFAMILY FAD/NAD(P)-binding domain 61 436 IPR036188 -
Spst9g00564 525 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00564 Spst-Chr9 5060092 5063884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00564 43 524 Miscellaneous Gene Families AT1G58440 79.959 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00564 K00511 - gmx:100820031 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00564 9 5060092 5063884 Spst9g00564 9 5060092 5063884 ECH