Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00309 ATGATCATGATGGATGCTTCAAACACGAACACGGTATCCTTGACTCCAGATCAATGCAATGCAGATCAAGCTAAGAGTGAGACAGCTGCTGCCTTTGACACTGATATATGGGATTTATTTGGAGAAGGAGAAGAGAAGTGCTTTGACTTTCAAGCTGACCATAAAGAAGAACAAAGCATGAGCAGAAGACCACCTCCTGATCCCGTGGCAGTGCTACGCGGCCATCGAGCTTCGGTCACAGATATTTCTTTTCATCCCTTTGAGCCAATATTATTTTCCAGTTCTGCTGATGGTGAGGTGCGGATTTGGGATACCCTTCAGCATCGAACAGTGTCATCTGCATGGTTACATAGTGCTGCTCATGGTATTGTTGCTGTTGCCTGTGGTTCTTCCCTCGGAACCAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGAATTTGATGATGCTGGTTTGTCAAGGATCCCATCACTTACAATTAAGACAAACAATTACCACTTTTGTAAGTTTTCCATGGTGAAGAATGATTCTGTTTGGTCAAAACAAGGGAAAGAATCGGAAGATTGCTACAGAACAGAGGCTGAAGGAATGTCTGATAAAGAAATTATGGAGGATAAAAGAGATGAGGCTAACACCAATCAAAGTTGTTCTAAAAGCTTTGGAGAAAATACATATAATGAAGGCCTACAATATGTGGCTTTGTCAGGGGAGAATTCTTCAGAGGTTGAAATTTGGGATCTCAAGTCTGCTCAAAAAATTGTACAACTTCCTTCAACCAATCCTAGTACCTCTTCAAGTGCTTGCAACAGAGGGATGTGCATGGCACTTCAATTGTTTTTATCATCTGAATCACAAGGATTCTTAAGTGTCTTGGCTGGCTATGAGGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCTAGCGTTCCAGTAACTTCTGTAAAATTTCATTCTGAGCCAGTTCTGAGCATCTGCATCGACGGGTTTTGCAAAGGGGGTATCTCAGGAGCTGCAGATGACAAAATTGTAATGTACAGCTTGGATCATTCTTCGGGTACATGTGTAGTGAAGAAAGAAATCAATTTGGAGCGACCAGGCATATCAGGCACCTCAATTCGACCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGATCACAGGGTGAGGATATACAATTTCCGCAAAGGAAATGCCTTAGCTATTTTGAAGTATCACCATGGCACATGCAATGCTGTAACTTTTTCGTCTGATTGTAAACTTATGGCCTCTGCATCGGAGGACTCAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA 1335 0.4285 MIMMDASNTNTVSLTPDQCNADQAKSETAAAFDTDIWDLFGEGEEKCFDFQADHKEEQSMSRRPPPDPVAVLRGHRASVTDISFHPFEPILFSSSADGEVRIWDTLQHRTVSSAWLHSAAHGIVAVACGSSLGTNKFVSQGRDGTVKVWEFDDAGLSRIPSLTIKTNNYHFCKFSMVKNDSVWSKQGKESEDCYRTEAEGMSDKEIMEDKRDEANTNQSCSKSFGENTYNEGLQYVALSGENSSEVEIWDLKSAQKIVQLPSTNPSTSSSACNRGMCMALQLFLSSESQGFLSVLAGYEDGSMLWWDVRNPSVPVTSVKFHSEPVLSICIDGFCKGGISGAADDKIVMYSLDHSSGTCVVKKEINLERPGISGTSIRPDGKIAATAGWDHRVRIYNFRKGNALAILKYHHGTCNAVTFSSDCKLMASASEDSTVGLWELYPPRI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00309 444 ProSitePatterns Trp-Asp (WD) repeats signature. 425 439 IPR019775 -
Spst9g00309 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 406 444 - -
Spst9g00309 444 PANTHER TRANSDUCIN BETA-LIKE 3 63 439 - -
Spst9g00309 444 Gene3D - 4 155 IPR015943 GO:0005515
Spst9g00309 444 Gene3D - 207 367 IPR015943 GO:0005515
Spst9g00309 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 113 IPR001680 GO:0005515
Spst9g00309 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 406 444 IPR001680 GO:0005515
Spst9g00309 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 72 104 - -
Spst9g00309 444 SMART WD40_4 357 396 IPR001680 GO:0005515
Spst9g00309 444 SMART WD40_4 399 438 IPR001680 GO:0005515
Spst9g00309 444 SMART WD40_4 65 104 IPR001680 GO:0005515
Spst9g00309 444 SMART WD40_4 107 150 IPR001680 GO:0005515
Spst9g00309 444 SMART WD40_4 311 350 IPR001680 GO:0005515
Spst9g00309 444 PRINTS G protein beta WD-40 repeat signature 91 105 IPR020472 -
Spst9g00309 444 PRINTS G protein beta WD-40 repeat signature 425 439 IPR020472 -
Spst9g00309 444 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Spst9g00309 444 SUPERFAMILY WD40 repeat-like 60 438 IPR036322 GO:0005515
Spst9g00309 444 Pfam WD domain, G-beta repeat 68 104 IPR001680 GO:0005515
Spst9g00309 444 Pfam WD domain, G-beta repeat 403 437 IPR001680 GO:0005515
Spst9g00309 444 Gene3D - 368 443 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00309 294 439 Miscellaneous Gene Families AT5G08390 24.658 1.60e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00309 K24770 - gmx:100800482 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00309 9 2958519 2967506 Spst9g00309 9 2958519 2967506 ECH