Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00304 ATGTCTGCGTCTGAAGCGGAGAAGAAGGTGGAGGAAGAGAAGGAGGAGGTCAAAGGGGGAGAACTCTTGTTCTGCGGTGCCACGGGTTGGGATATCATTGGCCGGCGCAGGGGCGCCATCGACGGTAACCTTGTCTCTCCCTCGCGCCTCCGTCCTCTCGTTGGTGTTAATATTCGTTTCGTCGCCTCCGGTTGCGTGTGTTACGTCGGTGAGAATGCAGTTTCTTGTCATTGTGTGGCATTGGACGTTGAAGGGCGCTGCTATACTTGGGGACGGAATGAGAAAGGGCAACTGGGTCATGGAGATATGATTCAACGTGATAGACCAACTGTTGTGTCTGAACTTTCCAAAATATATGCTCAGTTTTCTGTAGGGTATGGTATTCGTCTGGGTTCTGGGGTTGTTGATGATTGTGTAGCAGTACTTTGGAAGAATGCCATGTGTACAACTATTGTATACAAAATTGTCAAAGCTGGAGCAGGGAGGAGCCATACCGTGGTTGTTACTGAGGATGGAAATTCCCTGGCCTTTGGATGGAACAAACATGGACAGCTTGGTTCGGGGTCTGTGAGAAATGAAATTGAGTCATCACCTGTTCGCTGTCTTGTGTCTGAAGTAAAACATACTGCTTGTGGCGGTGACTTTACTGTGTGGTTATCTTCCATTGAAGGAGTTTCTATACTAACTGGAGGGCTTCCACAGTATGGACAGCTTGGGCATGGAACTGATAACGAGTATAATTCCAAAGACAGCTCTGTGAAGTTGGTTTATGAACCCCAGCCACGCCCTCGAGCAATTGCTGCTCTTGCTGGGGAAACTATTGTCAAAGTGGCATGTGGAACGAATCATACAGTGGCGGTGGATAAGAATGGCTTTGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAGTGGGTCCCACGCCGTGTTGATGTTTTTCAGAATAGAAATCTTTTGCCGCCTGATGCTATTATTTCAGCTGGTGCTGTGAGTTCTTCATGTACTGCAGGTGGTGGGCAGTTGTATATGTGGGGCAAATTAAAGAACACCGGTGATGACTGGATGTATCCAAAGCCTCTGATGGATTTAAGTGGGTGGAATATACGATGCATGGATTCAGGCAATATGCATCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGACATGCTCAGAATGGAGAGCTGGGATATGGACCTGCTGGACAGAAGTCTTCAGCTGTACCCAAGAAAGTGGATATACTTGAGGGTATGCATGTAATAAGTGTTGCTTGTGGTATGGGCCATTCCATGGTTATTGTTGATAGAGCAAATGTTGCTGATCGGCTTGATCAGCTTGATATTTATGATGGGAAAGCTGTTGGAGAAGGTAACGAGGCTGTAAATATTACTCCAGTTCCTAAGCAGGCTGCAAAAAAGGGTGCAAAGGCTGCTGACAATTCTAAGAAGAGGAAAAAGTCAAAAGATTCATCCGAGTCAGAAGAGGAAGAGGATGCTGAAGAAAGTGAAGATAGCGAGGAGGATGAAATTAATGGTGAGGCTGAGGTGAAACGATCCCGTGGTTCTGGTAGAGGCCGAGGTAAGGCATCCAAAACATCTGGTGCCAAGGGAAAGGGCTCGGCTGCGAAGGGAAAAGGCTCAGCGGCCAAGGAAAAAGGTGGTGGTGGCCAAGGACGGGGTGGGACTTCAGCTAATAAGAACAGTTCTAAATCCCCTCAGAAGAAGCATAAGAGAGGGTTATGCGGTCACGAGTTCACGAGATTGCTTGCAAAGGAAGATAATGTAAAACAAAGATGGAAGGTTATAGGTTTCAGATACAGGTATCCATCTGTTGAGGATGATTTGAACAAGAACAGTGTCTGGTTTTCACTCGTTAAACAATATCAGTTTGTAGCATTCAGGCCATGTATAAGCCCTGTTTCAATGCATTTGGGCTCTTGTTATGCTCAAAGTTGTTGGGCTCTGATTTGGTTTCTCAATGCATGCACATGTGCTAATACCACTGCACTCACTAAAGCCATGGTAAAGGAGCAAGATTTTAATAGTGGATTATCAAAGAAAACCAAGTATGGACCAAACAAACTGCGAGAAGAGCAAAATCGCGATTCTGTTGCCGAGTCCTCCACATTTCAAAGCAGATTCGAAAACGGGGTTGCGTGCGCTAATCATCGTGTGCGCCCAAAAATTGAAAACCCATTTTTGATTTGGTACGTGAAAGAGAAGGGAGACGAAGTGATGCAAAGGGAAACGGAACGCGGACTCCAAGGCAAAAACATAAGGCAGATTTAA 2316 0.462 MSASEAEKKVEEEKEEVKGGELLFCGATGWDIIGRRRGAIDGNLVSPSRLRPLVGVNIRFVASGCVCYVGENAVSCHCVALDVEGRCYTWGRNEKGQLGHGDMIQRDRPTVVSELSKIYAQFSVGYGIRLGSGVVDDCVAVLWKNAMCTTIVYKIVKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSSIEGVSILTGGLPQYGQLGHGTDNEYNSKDSSVKLVYEPQPRPRAIAALAGETIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWVPRRVDVFQNRNLLPPDAIISAGAVSSSCTAGGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNIRCMDSGNMHHFVGADSSCISWGHAQNGELGYGPAGQKSSAVPKKVDILEGMHVISVACGMGHSMVIVDRANVADRLDQLDIYDGKAVGEGNEAVNITPVPKQAAKKGAKAADNSKKRKKSKDSSESEEEEDAEESEDSEEDEINGEAEVKRSRGSGRGRGKASKTSGAKGKGSAAKGKGSAAKEKGGGGQGRGGTSANKNSSKSPQKKHKRGLCGHEFTRLLAKEDNVKQRWKVIGFRYRYPSVEDDLNKNSVWFSLVKQYQFVAFRPCISPVSMHLGSCYAQSCWALIWFLNACTCANTTALTKAMVKEQDFNSGLSKKTKYGPNKLREEQNRDSVAESSTFQSRFENGVACANHRVRPKIENPFLIWYVKEKGDEVMQRETERGLQGKNIRQI 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00304 771 PANTHER PROTEIN RCC2 151 553 IPR028641 -
Spst9g00304 771 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 291 346 IPR000408 -
Spst9g00304 771 PRINTS Chromosome condensation regulator RCC1 signature 387 408 IPR000408 -
Spst9g00304 771 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Spst9g00304 771 PRINTS Chromosome condensation regulator RCC1 signature 227 241 IPR000408 -
Spst9g00304 771 Pfam Regulator of chromosome condensation (RCC1) repeat 290 328 IPR000408 -
Spst9g00304 771 Pfam Regulator of chromosome condensation (RCC1) repeat 396 442 IPR000408 -
Spst9g00304 771 Pfam Regulator of chromosome condensation (RCC1) repeat 228 287 IPR000408 -
Spst9g00304 771 Pfam Regulator of chromosome condensation (RCC1) repeat 171 217 IPR000408 -
Spst9g00304 771 Pfam Regulator of chromosome condensation (RCC1) repeat 84 165 IPR000408 -
Spst9g00304 771 MobiDBLite consensus disorder prediction 696 716 - -
Spst9g00304 771 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 277 287 IPR000408 -
Spst9g00304 771 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 171 IPR000408 -
Spst9g00304 771 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 432 442 IPR000408 -
Spst9g00304 771 Gene3D - 258 518 IPR009091 -
Spst9g00304 771 SUPERFAMILY RCC1/BLIP-II 20 445 IPR009091 -
Spst9g00304 771 Coils Coil 3 23 - -
Spst9g00304 771 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 290 IPR000408 -
Spst9g00304 771 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 445 IPR000408 -
Spst9g00304 771 Gene3D - 6 257 IPR009091 -
Spst9g00304 771 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 172 222 IPR000408 -
Spst9g00304 771 MobiDBLite consensus disorder prediction 502 519 - -
Spst9g00304 771 MobiDBLite consensus disorder prediction 469 588 - -
Spst9g00304 771 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 158 168 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00304 Spst-Chr9 2858682 2872490 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00304 - - pvu:PHAVU_009G015100g 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00304 9 2858682 2872490 Spst9g00304 9 2858682 2872490 ECH