Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00265 ATGCAGCAAGGAGATTACACCTCCGCTTCCTATTATCAATTTCCTCATCTCCAAAACCCCAACCCCAATCCCAACCCCAACCCTAACCCTTCCGATCCCAACCCCAACAACCTGTACGCTTCTGCCCCTCCCTTTACCCCCAATTACGCTCCTTCTGATTACACCAATTATCATCCTTCCTATCCTCAAAATCCTGATCCTATTCCACCCACTGCTCCTCCGTCCTTCCCTCCCTCTTCCTCCAACCCTAATTTCAATTTGCCATTCGAATCAAACCCTTCATACCAACAACCACAACAACAACCCTATTTTCCACCATATGATCAGCATCAAACGCCTCCCACTTACGCCCCTCCCAACCCCAATTCCACTCCCTCCCTATACAACTCTGCTCCCTACAACTACACCGGAGGCTCCTCCGTTCCGCCTATTCAGAACTACGAACCGCCAGCTTACGAGGCTCCAGTGAGGCCCGATCACGGCGGTGGCTATTTCGACGACAGATACGGAGGCAACTTCAATCGGAGCCATTCGGATTTGGGATCTGATTATTACGGAAAGAGCGGTGGTAATTCGAGGTATGAAGGTGGCGGCGGCAGTGATGATGGCTACGGAGATGGGGTGTATGCTTATCAGGGAGGTAAAGTGGAACCCTATGGGGCGCGTGGCACGGCGCCGAAATCTTCGACTTGGGCAGCGTTTGATGATTATGGAAGGACCATCAGTTTCCCCTCGCAAAAGGAATCTTCTTTTGGGGGTAAGATTGTGAAAGCGGTGCCCAAGATTGATACCCATGAAGACGTGAAAGGTGGTGGCGTGCAAAAATTTCGGGTCAAACTATTGGCGGAAAGTGGGGGTCAGGTCACCATGGATGTTCTCTGTCAGATTGGTCTGGATGGAATTCGTATGTTGGATCCAAATACCAGCCGGACATTGAGGATTTATCCTCTTGAGAATATAACAAGATGTGACAGAGTCGATTCATCTACCTTTGCATTTTGGTCAAAGAGCCCTGTGGATATTGAGCCAAGACGAATCAGATTGCAATCTAATAGTTACACCACCAACACACTTTTGGATACAGTGACTGCTGCAACTATACAGTTCAAGGAAATGGGTGGAAGCAGGAGGCCTGCAGAACCGGTGAAAACAAATGACCAGCCTCAAGAAAGAAAGAAAGGTTTTGGCGATTGGATGAATCTGATTAAGCCTGCTAATGAAGAGAAGGATCATTGGGTGCCAGATGAAGCTGTCACAAAATGTACAGCATGTGGCTCTGATTTTGGGGCTTTTAATCGCAAGCATCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACTCAAGGTAGAATTGCTCTTACTGTTGATGAGAATGCACAGCCTGTGCGAGTTTGTGACCGGTGCATGGCAGAGGTGACTCAGCGACTGACTAGTGCTAAGGAGTCATTAAGTAAACCCGCGTTGCAGAGTCATGAGGATCTTGCCAGGAAACTTCAGGAGGAGCTGGAGAGAAATCGAAAGACATCAGGTTCCAAGTCTGATGGATCTGCAAGGCGGATGAAGGAAGTCGCATGTCCTATTTGCACTGTCCATCTGCAGGTTCAGGTGCCTAGCTCAGGTTCAGAGACCATTGAGTGCGGAGTTTGCCAACACCCATTTCTTGTGAGTGCTCATTGA 1683 0.4854 MQQGDYTSASYYQFPHLQNPNPNPNPNPNPSDPNPNNLYASAPPFTPNYAPSDYTNYHPSYPQNPDPIPPTAPPSFPPSSSNPNFNLPFESNPSYQQPQQQPYFPPYDQHQTPPTYAPPNPNSTPSLYNSAPYNYTGGSSVPPIQNYEPPAYEAPVRPDHGGGYFDDRYGGNFNRSHSDLGSDYYGKSGGNSRYEGGGGSDDGYGDGVYAYQGGKVEPYGARGTAPKSSTWAAFDDYGRTISFPSQKESSFGGKIVKAVPKIDTHEDVKGGGVQKFRVKLLAESGGQVTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRVDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSRRPAEPVKTNDQPQERKKGFGDWMNLIKPANEEKDHWVPDEAVTKCTACGSDFGAFNRKHHCRNCGDIFCDKCTQGRIALTVDENAQPVRVCDRCMAEVTQRLTSAKESLSKPALQSHEDLARKLQEELERNRKTSGSKSDGSARRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00265 560 PRINTS Proline rich extensin signature 62 78 - -
Spst9g00265 560 PRINTS Proline rich extensin signature 41 53 - -
Spst9g00265 560 PRINTS Proline rich extensin signature 102 114 - -
Spst9g00265 560 PRINTS Proline rich extensin signature 143 159 - -
Spst9g00265 560 PRINTS Proline rich extensin signature 114 135 - -
Spst9g00265 560 MobiDBLite consensus disorder prediction 122 141 - -
Spst9g00265 560 MobiDBLite consensus disorder prediction 82 106 - -
Spst9g00265 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 480 IPR013083 -
Spst9g00265 560 MobiDBLite consensus disorder prediction 34 61 - -
Spst9g00265 560 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 415 475 IPR017455 -
Spst9g00265 560 Coils Coil 490 510 - -
Spst9g00265 560 FunFam Zinc finger, FYVE-type, endofin 402 480 - -
Spst9g00265 560 MobiDBLite consensus disorder prediction 372 393 - -
Spst9g00265 560 MobiDBLite consensus disorder prediction 62 81 - -
Spst9g00265 560 Pfam FYVE zinc finger 411 475 IPR000306 GO:0046872
Spst9g00265 560 SUPERFAMILY PH domain-like 278 338 - -
Spst9g00265 560 MobiDBLite consensus disorder prediction 19 33 - -
Spst9g00265 560 SMART fyve_4 407 476 IPR000306 GO:0046872
Spst9g00265 560 CDD PTB 277 333 - -
Spst9g00265 560 MobiDBLite consensus disorder prediction 107 121 - -
Spst9g00265 560 MobiDBLite consensus disorder prediction 1 141 - -
Spst9g00265 560 MobiDBLite consensus disorder prediction 1 18 - -
Spst9g00265 560 PANTHER PROTEIN FREE1 1 560 IPR045893 GO:0036258|GO:0043130
Spst9g00265 560 SUPERFAMILY FYVE/PHD zinc finger 410 482 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00265 Spst-Chr9 2506702 2515004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00265 393 476 EF-hand Containing Proteins AT3G14270 34.694 1.03e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00265 - - gmx:100794840 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00265 9 2506702 2515004 Spst9g00265 9 2506702 2515004 ECH