Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00251 ATGAATCGAATAGGGATGCTATCGTTTCACTCATGTGGATGTTGCCGCGTTTCAACATCCAGAGCGTTTCATTTCCAATTCCGAAGCTCACCTCCTTCTGCACTCTTTCTCTCAGCTACGAGCTATAAATTTCGTTCTGCCGTAGCGAGCATTGGTTCTGGTTTCACCGGCGACTCAGACTTCGATGGAGAGCGAAAATTGAACTTCTCTGGTGTGCGGTTGGAAGAGGCTGTCGATAGCGGAATAGGATCTGGAAAACTCAGACTCGATAATTGGATCTCTTCCCGCATCAGTGGAATTAGTAGAGCACGCGTTCAATCAAGTATCAAATCGGGACTCGTACTCGTAAATGGCCGCGTCGTCGATAAGGCTTCTTTCAATGTCAAAGCTGGGGATCAGATCAGATGCACAATCGCAGAGTTGCAGAAGTTGAGGGCTGTGCCAGAAAATATACCTTTGGATATAGTTTATGAAGATGAGCATGTTCTAGTCATAAATAAACCTGCACACATGGTTGTGCATCCAGCTCCTGGAAATACGTCTGGGACACTTGTCAATGGCATTCTTCACCATTGCAACCTTCCAAATGTTGAATTTTTTAAAGAGGAAGTTCTTTCAGATACAGAATATTCTGATGATGAGTTGAATAGCTATGGCTCCATGGCAAGTTCTTGTGATGAATCACATTCTAGATTGTCTATGGCATCAATTCGCCCAGGGATTGTACACAGATTGGACAAAGGCACAAGTGGGCTACTTGTTGTTGCAAAGGATGAGCATTCACATTTGAAATTATCTGAGCAATTCAAGCAACGAACCATCAAGAGGGTTTATGTTAGTCTCACTGCTGGGGTACCCACTCCAGTTGCTGGGCGTGTTGAGGTTCCAGTTGGCCGTGATCTTAATAACCGGCTGCGTATGACTGCTGTAACTGGACCAGTTAATTCTAGAAAGGCCCGTCATGCTGCTAGTAGGTACAAAGTAATTGAGATACTGGCTGGGGGAAGTTGTTCATTGGTTGAGTGGAAATTGGAAACTGGACGCACTCATCAGATCCGTGCACATGCGAAGTATTTGGGAGTTCCTTTAGTGGGTGATGAGGTGTATGGAGGGACAAAAAACATGGTCTTGTCACTGCTTAGGCCGCGAACTCCCATCAGTTTGCATGGCAAAATTGTACAGTTGGTTTCAAGACTAGGTAGGCCTTGCCTTCATGCTTTGACGCTCGGGTTTCAGCATCCCCATACAGGGGAGCAGGTGCACTTTTCATGTGAACCCCCTGCAGACTTCGATGAGATTTTGAGCCAGCTTCGTAGAATTGGTAGTGAGAGGGTTTCTCTCTCAAAGCGTTCAAATTTATGA 1362 0.4552 MNRIGMLSFHSCGCCRVSTSRAFHFQFRSSPPSALFLSATSYKFRSAVASIGSGFTGDSDFDGERKLNFSGVRLEEAVDSGIGSGKLRLDNWISSRISGISRARVQSSIKSGLVLVNGRVVDKASFNVKAGDQIRCTIAELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFFKEEVLSDTEYSDDELNSYGSMASSCDESHSRLSMASIRPGIVHRLDKGTSGLLVVAKDEHSHLKLSEQFKQRTIKRVYVSLTAGVPTPVAGRVEVPVGRDLNNRLRMTAVTGPVNSRKARHAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLVGDEVYGGTKNMVLSLLRPRTPISLHGKIVQLVSRLGRPCLHALTLGFQHPHTGEQVHFSCEPPADFDEILSQLRRIGSERVSLSKRSNL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00251 453 SUPERFAMILY Pseudouridine synthase 147 438 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Spst9g00251 453 CDD PseudoU_synth_RluA_like 162 411 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Spst9g00251 453 Pfam S4 domain 88 134 IPR002942 GO:0003723
Spst9g00251 453 Gene3D Pseudouridine synthase 154 203 - -
Spst9g00251 453 Gene3D Pseudouridine synthase 207 441 - -
Spst9g00251 453 Pfam RNA pseudouridylate synthase 161 356 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Spst9g00251 453 Gene3D - 82 143 IPR036986 GO:0003723
Spst9g00251 453 SMART s4_6 87 152 IPR002942 GO:0003723
Spst9g00251 453 SUPERFAMILY Alpha-L RNA-binding motif 86 174 - -
Spst9g00251 453 CDD S4 88 166 - -
Spst9g00251 453 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 92 435 - -
Spst9g00251 453 ProSitePatterns Rlu family of pseudouridine synthase signature. 242 256 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Spst9g00251 453 ProSiteProfiles S4 RNA-binding domain profile. 87 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00251 Spst-Chr9 2297884 2302694 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00251 K06180 - gmx:100810383 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00251 9 2297884 2302694 Spst9g00251 9 2297884 2302694 ECH