Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00249 ATGGTGAACCGCATCTTTGACAGGCGCAACGGCGTTACTCAACAAAACCCTAGTGTCTCAATCAATACTCCACCAAACACAGCTCCATCCATGGCTTTCATCAAATCAAGCGCACGCTTGCGCCACTCCTTCTCACCGCTCCTACCCCGCACTTTCAAACTACACTCTTCTTCAGCTTCACTTTCCGAGCCTGTTCCCGAACCACTCCTCCAACCTGATCCAAACGACACATGCCAAACTTCAAACCTATCCCCCGAGGAAACCACCTTAGCCGACAAACTCCACGCCGCCATCAAAGACCACCACCGCAGAAATCCCACGCCAAACCCTAACGCCCCTCCCCCCAGTCCCAACCTCACCATCCCCGATCTCTCCCTCGACTTCTACGGCCTCTCCGCCTCTAACTCACTCTCCCCCGCCGTCGCCCGCCGCGTCATCGAGAAATGTGCCGCCGTCCGCCACGGCATCCCCTTCCTCCAATCCCTTTCGTTCTTCAATTGGGCCACCGCGCTCGACGGATTTCCCCCCTCGCCGGATCCCTACAACGAGATGCTCGACCTCGCCGGAAAGCTGCGACATTTCGACCTCGCGTGGCACATCATCGACCTCATGAAGGCTCGCGGCGTCGAAATCACCGTTCACACGTTCTCCGCCCTCGTCCGCCGCTACGTGAGGGCCGGATTACCTGCGGAGGCGGTGCACGCGTTTAACCGTATGGAGGATTATGGCTGCACCCCCGATAAGGTTGCTTTTTCAATTGTGATTAGTAGCTTGTGTAAAAAAAGATGGGCGAATGAGGCTCAATCGTTTTTTGATAGTCTCAAGCATAAGTTTGAGCCTGATGTTTTAGTTTTCACTAGTTTGGTTTATGGGTGGTGTCGTGCTGGTAACATATCTAAAGCTGAAGAGGTGTTTAATGATATGAAGATGGCTGGGATTAAGCCTAATGTTTATACTTATAGCATTGTGATTGATTCGTTGTGCCGGTGCGGCCAAATTACGCGTGCACATGATGTTTTTGCCGAGATGATTGATTCAGGGTGTGATCCTAATGCTGTTACTTTCAATAGTTTGATGCGGGTTCATGTGAAGGCTGGGAGGACTGAGAAGGTTTTGCAGGTTCACAATCAGATGAAGAGGCTTGGTTGTCCTGCAGATACCATCAGCTACAATTTCATCATTGAGAGTCATTGTAGGGATGAGAATCTTGATGAGGCTGTGAAGGTTCTCAATCTGATGGTCAAGAAAGGGGTTGCTCCTAATGCGTCCACTTTCAATTGTGTTTTTGGATGCATAGCTAAGTTGCATGATGTGAATGGTGCACATAGGATGTACGCTAGAATGAAGGAGCTGAAGTGCCAGCCCAATACGTTGACTTATAATATATTGATGAGGATGTTTGCTGAGTCGAGATCTACTGATATGGTTCTGAAAATGAAGAAGGAAATGGATGAGAATCAGGTTGAACCTAATGTTAACACTTACCGGATTTTGATTTCAATGTTTTGTGAAATGAAGCACTGGAACAATGCTTACAAGTTAATGAAGGAAATGGTCGAAGAAAAATGCCTTAGACCCAATCTGTCAGTTTATGAAACGGTTCTGGAGCTGCTCAGAAATGCTGGACAATTGAAAAAGCATGAAGAGTTGGTGGAAAAGATGGTTGCGAGGGGATTCGTCAGTCGCCCTTTGTAG 1695 0.4855 MVNRIFDRRNGVTQQNPSVSINTPPNTAPSMAFIKSSARLRHSFSPLLPRTFKLHSSSASLSEPVPEPLLQPDPNDTCQTSNLSPEETTLADKLHAAIKDHHRRNPTPNPNAPPPSPNLTIPDLSLDFYGLSASNSLSPAVARRVIEKCAAVRHGIPFLQSLSFFNWATALDGFPPSPDPYNEMLDLAGKLRHFDLAWHIIDLMKARGVEITVHTFSALVRRYVRAGLPAEAVHAFNRMEDYGCTPDKVAFSIVISSLCKKRWANEAQSFFDSLKHKFEPDVLVFTSLVYGWCRAGNISKAEEVFNDMKMAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMIDSGCDPNAVTFNSLMRVHVKAGRTEKVLQVHNQMKRLGCPADTISYNFIIESHCRDENLDEAVKVLNLMVKKGVAPNASTFNCVFGCIAKLHDVNGAHRMYARMKELKCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDENQVEPNVNTYRILISMFCEMKHWNNAYKLMKEMVEEKCLRPNLSVYETVLELLRNAGQLKKHEELVEKMVARGFVSRPL 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00249 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Spst9g00249 564 Gene3D Tetratricopeptide repeat domain 273 346 IPR011990 GO:0005515
Spst9g00249 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Spst9g00249 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Spst9g00249 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Spst9g00249 564 MobiDBLite consensus disorder prediction 1 27 - -
Spst9g00249 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Spst9g00249 564 Pfam PPR repeat 353 383 IPR002885 -
Spst9g00249 564 MobiDBLite consensus disorder prediction 58 84 - -
Spst9g00249 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 353 386 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 214 247 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 284 317 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 388 422 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 318 352 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 424 457 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 494 526 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 181 212 IPR002885 -
Spst9g00249 564 NCBIfam pentatricopeptide repeat 459 492 IPR002885 -
Spst9g00249 564 Gene3D Tetratricopeptide repeat domain 437 563 IPR011990 GO:0005515
Spst9g00249 564 Gene3D Tetratricopeptide repeat domain 347 436 IPR011990 GO:0005515
Spst9g00249 564 Gene3D Tetratricopeptide repeat domain 132 268 IPR011990 GO:0005515
Spst9g00249 564 Pfam PPR repeat family 213 260 IPR002885 -
Spst9g00249 564 Pfam PPR repeat family 386 431 IPR002885 -
Spst9g00249 564 Pfam PPR repeat family 280 329 IPR002885 -
Spst9g00249 564 Pfam PPR repeat family 456 503 IPR002885 -
Spst9g00249 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Spst9g00249 564 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Spst9g00249 564 PANTHER OS03G0856100 PROTEIN 294 559 - -
Spst9g00249 564 MobiDBLite consensus disorder prediction 8 27 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00249 142 558 Glycosyltransferase AT1G05670 27.064 7.74e-52 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00249 - - gmx:100800850 930.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00249 9 2289407 2291630 Spst9g00249 9 2289407 2291630 ECH