Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00135 ATGTTTTATTACAGTGTTGGTTTGGCAGAGAGGGAGGAGGGTGACTTGGGACCTGTTTATGGATTTCAATGGAGGCACTTTGGTGCGAGATATATTGACATGCATGATGACTACTCCGGCCAAGGGTTTGATCAGCTTTTAGACGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATCATTCTCTCTGCATGGAACCCAGCTGATCTTAAATTAATGGCACTTCCCCCATGCCACATGTTTGCACAGTTTTATGTAGCACATGGTGAGCTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTCCTGACATGCATGATTGCTCATGTCTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATACACATGTTTACCGCAATCACGTGAGGCCTTTGCAGGAGCAACTCCATAACCTGCCAAAACCGTTTCCAATTTTGAAGATAAATCCAGAGAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTTAAGCTCGTAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAA 597 0.4288 MFYYSVGLAEREEGDLGPVYGFQWRHFGARYIDMHDDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPADLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHVIGDTHVYRNHVRPLQEQLHNLPKPFPILKINPEKKDIDSFVAADFKLVGYDPHQKIDMKLAV 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00135 198 ProSitePatterns Thymidylate synthase active site. 60 88 IPR020940 GO:0004799|GO:0006231
Spst9g00135 198 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 4 198 IPR036926 -
Spst9g00135 198 NCBIfam thymidylate synthase 11 198 IPR000398 GO:0004799|GO:0006231
Spst9g00135 198 PANTHER THYMIDYLATE SYNTHASE 1 2 198 IPR045097 GO:0016741
Spst9g00135 198 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 1 198 IPR036926 -
Spst9g00135 198 CDD TS_Pyrimidine_HMase 12 151 IPR023451 -
Spst9g00135 198 PRINTS Thymidylate synthase family signature 75 90 IPR000398 GO:0004799|GO:0006231
Spst9g00135 198 PRINTS Thymidylate synthase family signature 93 119 IPR000398 GO:0004799|GO:0006231
Spst9g00135 198 PRINTS Thymidylate synthase family signature 49 68 IPR000398 GO:0004799|GO:0006231
Spst9g00135 198 PRINTS Thymidylate synthase family signature 131 148 IPR000398 GO:0004799|GO:0006231
Spst9g00135 198 FunFam thymidylate synthase isoform X2 1 198 - -
Spst9g00135 198 Pfam Thymidylate synthase 11 198 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00135 Spst-Chr9 1109768 1111214 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00135 K13998 - gmx:100786329 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00135 9 1109768 1111214 Spst9g00135 9 1109768 1111214 ECH