Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00103 ATGGCACTTCCCACGTCAAACCTATTTCCACTTCTTCTTCTCCTTCTTCTCTCTCTCTTCGCTAAGTCCGGGAGCGCTCACGATTACGCCGAGGCATTGTCCAAGGCAATCCTCTTCTTCGAGGGACAACGCTCCGGATTCTTGCCGCAGGACCAGAGAATGACGTGGCGTGCCAATTCGGGTCTCAGCGACGGATGGACCTACAACGTCGACCTCACCGGCGGCTACTACGACGCAGGCGACAACGTGAAGTTCGGGTTTCCGATGGCATTCACCACCACAATGCTCTCCTGGAGTGTGATCGAATTCGGAGACATGATGCCTCCCAACGAGCACAGAAACGCGCTGGTGGCAATCCGTTGGGCTACCGATTATCTCCTCAAAACCGTTTCACAGCCCAATCGCATTTTCGTTCAGGTGGGTGATCCAATCTCTGACCACAACTGTTGGGAAAGACCCGAGGACATGGACACAAGTAGGACTGTGTATGCTGTTGATGCACCAAACCCAGCTTCAGATGTGGCTGGTGAAACTGCTTCGGCACTGGCTGCTTCATCCATGGCTTTTCGTTCATCGGATCCTGCTTATTCAGAGACTTTGCTGCGAAACGCTGTCAAGGCATTTCAACTCGCCGATAACTATAGGGGTGCCTACAGTGACAATTCTAATGTTAGGGATGGTGTGTGCCCATTTTATTGTGACTTCGATGGATATCAGGACGAATTGTTATGGGGAGCCGCATGGCTGAGGAGGGCCACTAAGGACGACAATTTCCTGAACTACATTCAAAGCAATGGCAAAACGCTTGGTGCTGAAGAAAATATAAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTTAATGTTCTTGTCTCCAAGGAAGTTATAGAAGGAAATGTATTATCTCTTGATTCCTACAAGACTTCCGCAGAAAGCTTTTTGTGCACACTGATACCCGAAACATCAAGTTCACATATAGAGTACACTCCCGGTGGACTCATATACAGGCCAGGTGGTAGCAACTTGCAGCATGCCACTTCAATCGCTTTCCTTGAATTGGTTTACGCTAATTACCTATCACGCACTTCACAAACCATCAATTGTGGGAACATCTATGTGAATGCACAAACTCTTCGCCAGCTTGCTAAGAAGCAAGTTGATTACATTTTGGGCGATAACCCAATGGGCATGTCGTATATGGTTGGCTATGGTAACAAGTATCCACAACGTATTCACCATCGTGGCTCATCTTTACCGGCCATTAAGGACCATCCTCAAGTCATTGCCTGCAAAGAAGGTTCAATCTACTTCAACTCAACCAATCCTAATCCTAATGTTCTCGTGGGAGCCGTAGTGGGAGGACCCGGAGAAGATGATGTGTATGGGGATGATAGGGCTGATTTTAGGAAGTCCGAACCAACCACATATATTAATGCACCATTTGTTGGGATTTTAGCATACTTTGTTGCTAATCCCAATCCTTGA 1485 0.4781 MALPTSNLFPLLLLLLLSLFAKSGSAHDYAEALSKAILFFEGQRSGFLPQDQRMTWRANSGLSDGWTYNVDLTGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGDMMPPNEHRNALVAIRWATDYLLKTVSQPNRIFVQVGDPISDHNCWERPEDMDTSRTVYAVDAPNPASDVAGETASALAASSMAFRSSDPAYSETLLRNAVKAFQLADNYRGAYSDNSNVRDGVCPFYCDFDGYQDELLWGAAWLRRATKDDNFLNYIQSNGKTLGAEENINEFGWDNKHAGLNVLVSKEVIEGNVLSLDSYKTSAESFLCTLIPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNIYVNAQTLRQLAKKQVDYILGDNPMGMSYMVGYGNKYPQRIHHRGSSLPAIKDHPQVIACKEGSIYFNSTNPNPNVLVGAVVGGPGEDDVYGDDRADFRKSEPTTYINAPFVGILAYFVANPNP 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00103 494 Pfam Glycosyl hydrolase family 9 29 485 IPR001701 GO:0004553|GO:0005975
Spst9g00103 494 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 388 414 IPR018221 -
Spst9g00103 494 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 461 479 IPR033126 -
Spst9g00103 494 FunFam Endoglucanase 25 493 - -
Spst9g00103 494 Gene3D - 25 492 IPR012341 GO:0005975
Spst9g00103 494 PANTHER ENDO-1,4-BETA-GLUCANASE 13 489 - -
Spst9g00103 494 SUPERFAMILY Six-hairpin glycosidases 9 490 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00103 Spst-Chr9 754096 758145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00103 6 491 Glycoside Hydrolase AT1G70710 60.041 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00103 K01179 - gmx:100814545 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00103 9 754096 758145 Spst9g00103 9 754096 758145 ECH