Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00083 ATGGCTATTCGTTTTCCAAGTGCCTTGAGAGCCAAACACATTCGTCTCCGATGTAATCTGTTTACAAATCAGGCAGCTACAACATCACTAGATGTGCCTAAAGGGTACTTTGCTGTGTATGTAGGAGAGGGTGATAAGAAGAGATATGTGATTCCAGTGTCATTGTTGAATCAACCATCATTTCAACAACTGTTGAGCATAGCCGAAGAAGAATTTGGCTTCACTCATCCAATGGGTGGTCTTACTATTCCATGCACAGAAGACATTTTTCCCAACGTATTTGAGTTTTTGCAGCAATCTCGTGTGAGTGGCAATGTCTCAGCCATTAAGAAACTCCACGCTCAGCTACTCAGAACAGGCATGCTCTTCCTCTCCCATCATCTCCACACCCAAATTATTGCCACATATGCTGCATGCCTCCCTAACTCCAACTTTCACTTACTCAAAAACTTCTTCAAATGCATGACCTCCACCAACCCATTACACTTCAACGCCATACTCTCTGATTTCTGTCGCAAAGGTTTCCCCTTTCTTGCTATCGCCTCCTTCTCCTTCATGCACACCAACGGTGTCCCCTTAGACACCTACGCTTTGTGTAGCATGTTGACCGCCTCATCCAAAGTCAAAGACCTTAATTTTGGGAAGCAGATACATACCCACGTGGGAAAATCAGGTTGGTCTTCTAGTGTGTTTGTGGGTAGTGCTCTCATTGATTTGTACTCCAAATTGTCGAATGTACAGGATGCAGCCCTTATGTTCGATGAAATTCCTGAGAAGAACACTGTGTGTGCCAATGCACTTTTGTCAGGTTATGGCGAAGCAGGGCTTTGGGCTCAGGAACTTGGACTTGTTAGGAAGATGCACGCGATGAAATTGAAGCATGATCACTTTACTCTATCAGCAGCTTTGCGTGCATGCACTGGATTGTCTGCTGTTGAAATGGGTAGGCAAGTGCATGGTTACTTGCTCCGTACGACACCTGATGTGGAGAGTGATGTGTTTATTCAGAGCGCGTTGATTGAAATGTATGGCAAGTGTGGATTAGTAAAGAAGGCTTTGCAAGTGTTCAAGTTGGTCGGTATGGAGATTAGGAAAGAAGTAAGAAGCAGGGACATTGTGTTATGGACTTCAATGCTTGGTGTGTACGGTAGGAATGGGCATTACAAGGAAGTGATTGATTTGTACAACGACATGTTGGTGGAAGGAATCCTGCCGGATGGAATAGCATTCTTGACAGTGATATCTGCTTGTGGTCGCACTGGCCAAGTTCATGCTGGAGTCAAGTATTTTGAATCAATGGCTAATGATTTCAAGTTAGATCCTGGTCCAGAACATTACAGCTGCCTGGTTGATTTACTTTGTAGGGCTGGTGAATTGCAGAGGGCGTGGGAATTGCTGAATGAGACACTCTATAAGGGAATGGGAAATTGTACTGTTTCAATGTGGGGAGCTCTACTCAGTGCTTGCGTGGATCGTGGGGATTTAGACCTGGGAAAATTGGCAGCTCAGAGGGCTCTTGAGTTAGATCCTCAAAATGTTGGGATATGCATTATGCTATCAAATCTGTATGCCCGGTTTGGCATGTGGGAGGAAATTGGACATTTGAGGGTATTGATCAAAGCAAGAGGGCTGAGAAAAGATGTTGGATGCAGTTGGGTTCAGGTGACTGACTAG 1674 0.4474 MAIRFPSALRAKHIRLRCNLFTNQAATTSLDVPKGYFAVYVGEGDKKRYVIPVSLLNQPSFQQLLSIAEEEFGFTHPMGGLTIPCTEDIFPNVFEFLQQSRVSGNVSAIKKLHAQLLRTGMLFLSHHLHTQIIATYAACLPNSNFHLLKNFFKCMTSTNPLHFNAILSDFCRKGFPFLAIASFSFMHTNGVPLDTYALCSMLTASSKVKDLNFGKQIHTHVGKSGWSSSVFVGSALIDLYSKLSNVQDAALMFDEIPEKNTVCANALLSGYGEAGLWAQELGLVRKMHAMKLKHDHFTLSAALRACTGLSAVEMGRQVHGYLLRTTPDVESDVFIQSALIEMYGKCGLVKKALQVFKLVGMEIRKEVRSRDIVLWTSMLGVYGRNGHYKEVIDLYNDMLVEGILPDGIAFLTVISACGRTGQVHAGVKYFESMANDFKLDPGPEHYSCLVDLLCRAGELQRAWELLNETLYKGMGNCTVSMWGALLSACVDRGDLDLGKLAAQRALELDPQNVGICIMLSNLYARFGMWEEIGHLRVLIKARGLRKDVGCSWVQVTD 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00083 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Spst9g00083 557 FunFam Pentatricopeptide (PPR) repeat-containing protein-like 333 557 - -
Spst9g00083 557 Pfam E motif 494 554 IPR046848 -
Spst9g00083 557 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 259 555 IPR046960 GO:0003723|GO:0009451
Spst9g00083 557 Pfam PPR repeat family 371 417 IPR002885 -
Spst9g00083 557 SUPERFAMILY TPR-like 430 531 IPR011990 GO:0005515
Spst9g00083 557 Pfam PPR repeat 337 357 IPR002885 -
Spst9g00083 557 Pfam PPR repeat 234 260 IPR002885 -
Spst9g00083 557 Pfam PPR repeat 263 289 IPR002885 -
Spst9g00083 557 Pfam PPR repeat 445 473 IPR002885 -
Spst9g00083 557 Pfam Auxin responsive protein 23 96 IPR003676 GO:0009733
Spst9g00083 557 Gene3D Tetratricopeptide repeat domain 331 530 IPR011990 GO:0005515
Spst9g00083 557 Gene3D Tetratricopeptide repeat domain 161 330 IPR011990 GO:0005515
Spst9g00083 557 FunFam Pentatricopeptide repeat-containing protein 161 329 - -
Spst9g00083 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Spst9g00083 557 NCBIfam pentatricopeptide repeat 373 406 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00083 Spst-Chr9 645734 649957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00083 105 557 Glycoside Hydrolase AT3G49170 30.989 5.10e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00083 - - gmx:100798332 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00083 9 645734 649957 Spst9g00083 9 645734 649957 ECH