Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00046 ATGGGTTTCTTCGGCACCATATTTGGTTTTTTTGGCTTTGGATTTGGAATTTCCATGGGTTTGGCTATTGGATATTATCTCTTTATCTATGTTCAACCCAGTGTTGTTGAGGATCCTGAAATTAAACCATTGGTAGATGAAGATTCAGAAGATATACAACGAATGTTTCCTGAAATACCACTTTGGATAAAGAATCCAGACTTTGATCGGGTTGATTGGCTTAACAAACTTGTTGAATATATGTGGCCATACCTGGAAAAGGCAATATGCAAGACAGCAAGAACAATTGCAAAACCTATAATTGATGAACAAATACCACAATATAAAATTGATGCTGTTGAGTTTGAAGAGCTAACACTAGGGTCCTTGCCGCCAACTTTTCAAGGAATGAAAGTTTACGAGACTGAAGAGAAAGAGTTAATAATGGAGATTGCTGTAAAATGGGCAGGAAATCCTAATGTCACTGTAGCTGTTAAGAAATTTGGGTTTAAAGCAACCATTCAGGTGCTGGATCTGCAAGTTTTTCTTCTACCTCGCATTACTTTGAAGCCTCTGGTTCCAAGTTTTCCATGCTTTGCCAATATTTACGTGTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGTACTTTACAAATTTGTTCAGGAGTTGATCAAAGATCAAGTTGCAAATATGTATCTATGGCCAAAAACCTTAGAAATTCAAGTTATAGATCCAATGAAAGCTATGAAGAAGCCTATTGGAATTTTAAATGCAAAGGTTATAAGAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCCGATCCTTATGTGCAATTAACACTTACCGAAGATAAGTTGACATCGAAAAAGACTACTGTGAAGCACAAGAACTTGAATCCTGAATGGAACGAGGAATTTAGTCTAGTTGTTAAAGATCCTGAGACCCAAGCTTTAGAGTTTGAAGTGTTTGACTGGGAACAGGTTGGGAAACATGACAAGATGGGTATGAATATGATTCCTTTGAAAGGACTTCAACCTGAAGAACCCAAAGTTTTTACTCTTGAACTTTTGAAAAACATGAATCCAAAGGATGCTCAAAATGAAAAGTCTCGTGGCCAAATTATTATGGAATTGACATATAAACCATTTAGAAAGGAAGAGTTGGCTAAAACTTTTGAGCGGGCTCAAACAGTACAAAAGCCTCCTGAAGGAACTCCTCCTGGTGGAGGTTTACTTGTAGTTATAATCCATGAAGCTCAAGATGTGGAAGGAAAGTACCATACTAATCCACATGTGCGTCTTATTTTCAAAGGAGAAGAGAGAAGGACCAAGATCATTAAAAAAAACAGAGATCCAAGGTGGGAAGAAGAGTTCCAGTTTTTGGTGGATGAGCCTCCCACAAATGATAAAATACATGTGGAAGTTGTTAGCACTTCGTCACGAAGCCTTCTACGTCAAAAGGAATCTTTGGGTTATGCAAACATTAGTCTCGCGGACGTTGTTGCGAACAATAGAATCAACGAGAGGCACCATCTTATAGACTCCAAGAATGGTCGTATCCAGATAGAGCTACAGTGGAGAGCTTCATAA 1614 0.3823 MGFFGTIFGFFGFGFGISMGLAIGYYLFIYVQPSVVEDPEIKPLVDEDSEDIQRMFPEIPLWIKNPDFDRVDWLNKLVEYMWPYLEKAICKTARTIAKPIIDEQIPQYKIDAVEFEELTLGSLPPTFQGMKVYETEEKELIMEIAVKWAGNPNVTVAVKKFGFKATIQVLDLQVFLLPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPVLYKFVQELIKDQVANMYLWPKTLEIQVIDPMKAMKKPIGILNAKVIRAMKLKKKDLLGASDPYVQLTLTEDKLTSKKTTVKHKNLNPEWNEEFSLVVKDPETQALEFEVFDWEQVGKHDKMGMNMIPLKGLQPEEPKVFTLELLKNMNPKDAQNEKSRGQIIMELTYKPFRKEELAKTFERAQTVQKPPEGTPPGGGLLVVIIHEAQDVEGKYHTNPHVRLIFKGEERRTKIIKKNRDPRWEEEFQFLVDEPPTNDKIHVEVVSTSSRSLLRQKESLGYANISLADVVANNRINERHHLIDSKNGRIQIELQWRAS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00046 537 Gene3D C2 domain 419 536 IPR035892 -
Spst9g00046 537 FunFam Synaptotagmin-2 isoform A 255 410 - -
Spst9g00046 537 ProSiteProfiles C2 domain profile. 402 518 IPR000008 -
Spst9g00046 537 Gene3D C2 domain 255 411 IPR035892 -
Spst9g00046 537 CDD C2 262 364 - -
Spst9g00046 537 FunFam Extended synaptotagmin-2 419 536 - -
Spst9g00046 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Spst9g00046 537 CDD SMP_SYT 60 248 - -
Spst9g00046 537 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Spst9g00046 537 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 534 IPR045050 GO:0008289
Spst9g00046 537 SMART C2_3c 419 517 IPR000008 -
Spst9g00046 537 SMART C2_3c 261 361 IPR000008 -
Spst9g00046 537 Pfam C2 domain 260 358 IPR000008 -
Spst9g00046 537 Pfam C2 domain 419 517 IPR000008 -
Spst9g00046 537 PRINTS C2 domain signature 304 317 IPR000008 -
Spst9g00046 537 PRINTS C2 domain signature 277 289 IPR000008 -
Spst9g00046 537 PRINTS C2 domain signature 326 334 IPR000008 -
Spst9g00046 537 CDD C2 420 521 - -
Spst9g00046 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 391 IPR035892 -
Spst9g00046 537 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Spst9g00046 537 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00046 Spst-Chr9 381159 384668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00046 257 508 Lipid Metabolism Gene Families AT3G61300 27.138 4.93e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00046 - - gmx:100780850 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00046 9 381159 384668 Spst9g00046 9 381159 384668 ECH