Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00043 ATGGAATCCAGCATGCCTCGCACTCTTCTTTTCATCGCCTTGCTTTCCATCGTCGTCACTGCGGCACATGCACGTGGTGGTCACAGGGGAAAGCATGGTCGCCATTTGGACCCTCAAAATGTTACTTACGATGGTAAGTCACTCTTTATCAATGGAAGACGTGAGATGCTGTTTTCTGGTTCCATCCATTATCCACGAAGCACCCCAGACATGTGGCCTATCATTCTTGATAATGCAAGACGTGGAGGCTTGAATGTCATTCAAACCTACGTGTTTTGGAATGCTCACGAGCCACAGCCGGGACAATTCAACTTTGAGGGCAATTATGACTTGGTGAAGTTCATTAAGCTTGTTCAAGCAAGCGGAATGTTCGTCACTCTCAGGGTTGGGCCCTTTATCCAAGCCGAATGGAACCACGGAGGACTTCCATATTGGCTCAGAGAGGTCCCTGGCATCATTTTTCGTTCTGACAATGAGCCTTATAAGCAACACATGCAAGCATTCGTGACAAAGATTGTACAGATGATGAAAGATGAGAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTAGCTCAGATCGAGAACGAGTACAACCACATTCAACTTGCATACGAGGAGAAGGGAGACAGTTACGTCCAATGGGCTGCAAACTTGGCAGTAGCATTTGACGTTGGAGTTCCATGGGTCATGTGCAAGCAAAGAGATGCACCTGATCCAGTGATCAATGCATGCAATGGAAGACATTGTGGTGATACCTTCTCAGGGCCAAACAAACCATACAAACCAGCCATATGGACAGAAAACTGGACCGCTCAATACAGAGTCAATGGAGATCCCCCATCCCAAAGATCCGCAGAAGATATTGCATTCTCAGTTGCTCGCTTCTTCTCCAAGAGTGGAAACTTGGTTAACTACTACATGTACCACGGCGGAACAAACTTCGGTAGAACCAGCTCTGCCTTTACCACAACCCGTTATTACGATGAGGCGCCGCTTGATGAATTCGGCCTTCGAAGAGAACCAAAATGGAGTCATTTGAGGGACGTGCACAAAGCTCTGCTCTTTTGCAGGAGGGCTATCCATGGTGGCGTTCCCACTGTGGAAAAGTTGAACGAGTTCCATGAGATTAGAATCTTTGAGAGGCCTGGATCAAACATTTGTGCTGCTTTCATCACTAATAACCACACCACACTGGACGCCACCGTTAACTTCAGAGGCATTAACTACTTTTTGCCTGCACATTCCATTAGCGTCCTCCCTGATTGCAAGACCGTGGTCTACAACACCCGAAGTATCGTTTCACAACATAACGCAAGGAACTACGAGAGGTCAGCCATTGCAAACAATTTCCAATGGGAGATGTTCAACGAGGCTATTCCAACAATCAAGAAAATGGACTTGTACCAAAGACTTCCAGCAGAGCTTTATAGCTTACTTAAGGACACCACTGATTATGCTTGGTACACCACTAGCTTCGAGTTGACTCAAGAAGACTTGCCAATAAAGCCTGGAGTTCTCCCAGTTCTTCGTATTATGAGTCTTGGACATTCAATGGTTGCATTTGTGAACGGAGACTTGATTGGAACTGCTCATGGTACCCATGAAGAAAAATCTTTTGAGTTCGAGCGACCAGTACAGTTCAGGGTCGGAACCAACTATATTTCCATTTTGGCTAGCACAGTTGGATTACCCGATAGTGGAGCTTACATGGAACATAGATACGCAGGACCCAAGTCTATAACCATCCTTGCTCTCAACACCGGAACACTTGATATCACTGACAATACCTGGGGTCATCGGGTTGGTCTCAAAGGTGAGGGCCTGAAAGTTTTCGATGCAGAAGGATCATTGAGGGCAAAGTGGAAGCCACTCGGTCCAATTCCACGCCCTCTCACGTGGTACAGGACAAGATTCGCCACCCCAGAGGGAACAGGTCCAGTTGCCATCAGGATGACGGGAATGGGCAAGGGATTGATCTGGGTCAACGGTAAAAGCATTGGTCGTCACTGGATGTCTTTCCTCTCCCCACTTGGAACGCCTACTCAATCAGAGTACCACATCCCAAGATCTTTCCTTAACCCACAAGACAATTTGCTTGTTATATTTGAAGAGGACATAACAGCTCCAGGACAGGTTGAGATCCTGAATGTGAACAGAGACACAATCTGCAGTTTTATTGCAGAGAACGACCCTGCGAATGTGGAGTCATGGGCGTCTAGGGGAGGAAACTTCTCGCCTATTGTGGCAGTTGTTGGACCAGAAGCCTCACTAGTGTGTACTCCCGGGAAAAGGATTGTGGCAGTTGAGTTCGCAAGCTTTGGCAACCCAAGTGGTTACTGCGGAGGCTTTGTTTTGGGGACTTGCAATTCTGCTGCGACCAAGCAAATCGTGGAGCAGGCATGCTTGGGCAAAGAAACTTGCACGGTTGCTGTGAACCGTGCAGTGTTCAACCAGAACGGCGTGGATCCCTGCCCAGAAATATTGGTGAAGAACCTTGCAATCCAAGTCAAGTGTTCCTAG 2523 0.476 MESSMPRTLLFIALLSIVVTAAHARGGHRGKHGRHLDPQNVTYDGKSLFINGRREMLFSGSIHYPRSTPDMWPIILDNARRGGLNVIQTYVFWNAHEPQPGQFNFEGNYDLVKFIKLVQASGMFVTLRVGPFIQAEWNHGGLPYWLREVPGIIFRSDNEPYKQHMQAFVTKIVQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGDSYVQWAANLAVAFDVGVPWVMCKQRDAPDPVINACNGRHCGDTFSGPNKPYKPAIWTENWTAQYRVNGDPPSQRSAEDIAFSVARFFSKSGNLVNYYMYHGGTNFGRTSSAFTTTRYYDEAPLDEFGLRREPKWSHLRDVHKALLFCRRAIHGGVPTVEKLNEFHEIRIFERPGSNICAAFITNNHTTLDATVNFRGINYFLPAHSISVLPDCKTVVYNTRSIVSQHNARNYERSAIANNFQWEMFNEAIPTIKKMDLYQRLPAELYSLLKDTTDYAWYTTSFELTQEDLPIKPGVLPVLRIMSLGHSMVAFVNGDLIGTAHGTHEEKSFEFERPVQFRVGTNYISILASTVGLPDSGAYMEHRYAGPKSITILALNTGTLDITDNTWGHRVGLKGEGLKVFDAEGSLRAKWKPLGPIPRPLTWYRTRFATPEGTGPVAIRMTGMGKGLIWVNGKSIGRHWMSFLSPLGTPTQSEYHIPRSFLNPQDNLLVIFEEDITAPGQVEILNVNRDTICSFIAENDPANVESWASRGGNFSPIVAVVGPEASLVCTPGKRIVAVEFASFGNPSGYCGGFVLGTCNSAATKQIVEQACLGKETCTVAVNRAVFNQNGVDPCPEILVKNLAIQVKCS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00043 840 SUPERFAMILY Galactose-binding domain-like 417 578 IPR008979 -
Spst9g00043 840 CDD Gal_Rha_Lectin_BGal 753 839 - -
Spst9g00043 840 SUPERFAMILY (Trans)glycosidases 37 357 IPR017853 -
Spst9g00043 840 Gene3D Glycosidases 38 356 - -
Spst9g00043 840 Pfam Glycosyl hydrolases family 35 47 353 IPR031330 -
Spst9g00043 840 Gene3D - 748 840 IPR043159 -
Spst9g00043 840 Pfam Beta-sandwich domain in beta galactosidase 364 432 IPR041392 -
Spst9g00043 840 FunFam Beta-galactosidase 37 357 - -
Spst9g00043 840 ProSiteProfiles SUEL-type lectin domain profile. 750 840 IPR000922 GO:0030246
Spst9g00043 840 FunFam Beta-galactosidase 600 724 - -
Spst9g00043 840 SUPERFAMILY Galactose-binding domain-like 596 743 IPR008979 -
Spst9g00043 840 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 186 198 IPR019801 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 321 337 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 265 280 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 51 68 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 184 199 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 302 317 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 630 644 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 72 90 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 657 673 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 PRINTS Glycosyl hydrolase family 35 signature 127 146 IPR001944 GO:0004553|GO:0005975
Spst9g00043 840 Pfam Galactose binding lectin domain 758 839 IPR000922 GO:0030246
Spst9g00043 840 Gene3D - 609 726 - -
Spst9g00043 840 PANTHER BETA-GALACTOSIDASE RELATED 25 760 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00043 Spst-Chr9 344691 347502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00043 41 839 Glycoside Hydrolase AT2G16730 58.603 0.0 1024
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00043 - - ccaj:109817195 1469.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00043 9 344691 347502 Spst9g00043 9 344691 347502 ECH