Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00022 ATGGATTCAGTTTTGCTGATCTTTTGCCTTGATACTATTAGAATCACACCAATTGATTATTGTACCAATGAGTTGGAGCATACAGGGCAAACATTTTTGTCCTCTTATAAGCTATTTTGTCTCCATATTCCATTTCGCTTCACAAACTGTGACCCTCTTTCAGATAAGCAAGCAGCCATGTCGATCTTGTCTATTCCGTCGCCAATCTATTCTTCTTCTTATTCCTCCCTTTCAATTTCTCGGCTCCCGTCTTCTCTGACGGCTCAGACACTGCAATTGAGCAGAAGAGCAAGAGGGAAAGGTGTGGTCGTAATGAGTATGGAGGCGGGTATTGGAGTCATGGGCACCAAATTGGGTATGATGAGCTACTTCCAACCCGACGGTGAGGTTGTTCCTGTCACTGTCGTTGGCTTCAAAGAAGGCAACATTGTCACGCAGATCAAAACTGAGGCCACCGATGGCTACAACGCCGTCCAGGTTGGTTACCGAAGGGTCAGAGACCGTAAATTGACCAAACCCGAAATCGGTCATCTCGAAAAGGTTGGTGCCATTCCCATGCGTCATCTTCAGGAGTTCCGTCTTCAAACCGTTGATCAATTCGACCTTAACCAACGCCTCGTTTTGGATGAACTTTTCGAGGAGGGTGATCTTGTTGATGTCTCTGGCACCACCATCGGCAAGGGTTTCCAAGGTGGAATCAAGCGGCATAACTTCAAAAGGGGTCCAATGTCCCACGGTTCGAAGAGTCATAGACAACTGGGATCAATTGGTGCTGGAACCACACCTGGTCGTGTGTACAAGGGAAAGAAGATGCCCGGAAGGATGGGAGGAACGAAGAGGAAGATAAGAAAGCTTAAGATTGTCAAAATCGATAAAGATCTTAACGTGGTAATGATCAAAGGTGCTCTCCCTGGTAAGCCTGGAAATCTTCTGCGGATAACTCCAGCCAAGATTGTGGGCAAGAACATTCCAAAGAATTAG 981 0.4638 MDSVLLIFCLDTIRITPIDYCTNELEHTGQTFLSSYKLFCLHIPFRFTNCDPLSDKQAAMSILSIPSPIYSSSYSSLSISRLPSSLTAQTLQLSRRARGKGVVVMSMEAGIGVMGTKLGMMSYFQPDGEVVPVTVVGFKEGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEIGHLEKVGAIPMRHLQEFRLQTVDQFDLNQRLVLDELFEEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDKDLNVVMIKGALPGKPGNLLRITPAKIVGKNIPKN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00022 326 FunFam 50S ribosomal protein L3, chloroplastic 238 318 - -
Spst9g00022 326 SUPERFAMILY Translation proteins 111 322 IPR009000 -
Spst9g00022 326 NCBIfam 50S ribosomal protein L3 112 313 IPR019927 GO:0003735|GO:0005840|GO:0006412
Spst9g00022 326 FunFam 50S ribosomal protein L3 142 206 - -
Spst9g00022 326 PANTHER 50S RIBOSOMAL PROTEIN L3 97 318 IPR019927 GO:0003735|GO:0005840|GO:0006412
Spst9g00022 326 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Spst9g00022 326 Gene3D - 143 202 - -
Spst9g00022 326 Gene3D Translation factors 238 318 - -
Spst9g00022 326 Pfam Ribosomal protein L3 204 292 IPR000597 GO:0003735|GO:0005840|GO:0006412
Spst9g00022 326 Hamap 50S ribosomal protein L3 [rplC]. 110 317 IPR019927 GO:0003735|GO:0005840|GO:0006412
Spst9g00022 326 MobiDBLite consensus disorder prediction 238 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00022 Spst-Chr9 221910 224371 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00022 K02906 - gmx:100802392 433.335