Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00020 ATGAAGAAGAGGATGAACACCACTTCTTCTTCTACTTCTGTTGCAGGTCTCCAGGCCTCGTCGAATGAACCACCTTCTTCATCTGCTGCTCTTGTTCACTTTCACAATCACAATTACAATGACGACGGAGAACAAACCCTCGCGCCTCCCAATCCCAATCCCAATCCCAACCCCAACCCCAACCTCGAGGATGGCTTCTATGAAATCGAAACCATACGCCGTAAGAGGCTACGCAAGGGTCAGCTCCAGTACCTAATCAAATGGCGTGGATGGCCTGAGACTGCCAACACTTGGGAGCCTCTTGAAAATCTACAGTCCGTTCCTGATCTCCTTCATGCTTTTGAGGACAGTCTCAAATCAGGAAAACTTCGCAAGCGCAAGCGCAAGCCTGTCGTTCATCACGCCCAAATCAAGAAGCACCCCCAACGTTCTACCACTTCTTACAGCCTTAGACATTTTCCAACTCACAACCCCCATCCTCAAGCACCCATCTTTCCTCACCAACCTCATCCTACTACCCTTCAACAACCTCAACAAACCAATGCAAACGCCTTTGCAGAACACGACCAAAATGATTACGATCCAAAGCTCAGTGAACTTAAGGCAACAACAAACTCTGGCCTTGAGTTAGATAACCTTGCAATACATTTCCGACAACCTAAGGTTTCAACTGCCAATGGTGGTCGCTTGAATTGCGTGGAACCAACTCAGACTGGGTGCTGCAGAGGAGCAAAAAGGAGAAAATCTGGTTCTGTCAAGAGGTTCAAAAGAGACCCAGATGGAGGGAAGCCCGTTGATGCTCAGAATCCAATCAGCGTTCCTGTTGGGGCAACCGCTGGTCGTGTGGGGAATAATAGTCCTATGAAGATGGATGATGCTAAAACTGCCTGCAATATTGTCAAGATTATAAAGCCAATAGGCTATTCATCTTCTTTATCGGACAACATGCAGGAGGTTTTAGTGACCTTTATGGCCATGAGGTCTGATGGAACAGAAGTGATGGTGAATAACAGATATCTCAAGGCATACAATCCACTTCTGCTGATCAATTTCTATGAGTTGCATCTCCGCTATAGTCCTACATAG 1086 0.4678 MKKRMNTTSSSTSVAGLQASSNEPPSSSAALVHFHNHNYNDDGEQTLAPPNPNPNPNPNPNLEDGFYEIETIRRKRLRKGQLQYLIKWRGWPETANTWEPLENLQSVPDLLHAFEDSLKSGKLRKRKRKPVVHHAQIKKHPQRSTTSYSLRHFPTHNPHPQAPIFPHQPHPTTLQQPQQTNANAFAEHDQNDYDPKLSELKATTNSGLELDNLAIHFRQPKVSTANGGRLNCVEPTQTGCCRGAKRRKSGSVKRFKRDPDGGKPVDAQNPISVPVGATAGRVGNNSPMKMDDAKTACNIVKIIKPIGYSSSLSDNMQEVLVTFMAMRSDGTEVMVNNRYLKAYNPLLLINFYELHLRYSPT 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00020 361 ProSiteProfiles Chromo and chromo shadow domain profile. 67 126 IPR000953 -
Spst9g00020 361 ProSitePatterns Chromo domain signature. 84 104 IPR023779 -
Spst9g00020 361 SUPERFAMILY Chromo domain-like 53 123 IPR016197 -
Spst9g00020 361 MobiDBLite consensus disorder prediction 1 34 - -
Spst9g00020 361 Gene3D - 50 119 - -
Spst9g00020 361 Pfam Chromo (CHRromatin Organisation MOdifier) domain 67 116 IPR023780 -
Spst9g00020 361 SMART chromo_7 66 119 IPR000953 -
Spst9g00020 361 MobiDBLite consensus disorder prediction 122 146 - -
Spst9g00020 361 PRINTS Chromodomain signature 77 91 IPR017984 -
Spst9g00020 361 PRINTS Chromodomain signature 92 104 IPR017984 -
Spst9g00020 361 PRINTS Chromodomain signature 64 72 IPR017984 -
Spst9g00020 361 MobiDBLite consensus disorder prediction 1 63 - -
Spst9g00020 361 MobiDBLite consensus disorder prediction 250 287 - -
Spst9g00020 361 CDD CD_CSD 67 116 - -
Spst9g00020 361 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 45 361 IPR044251 GO:0006325|GO:0031507
Spst9g00020 361 SMART ChS_2 288 361 IPR008251 GO:0005634
Spst9g00020 361 MobiDBLite consensus disorder prediction 122 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00020 Spst-Chr9 211097 215897 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00020 - - vun:114164029 538.88