Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00015 ATGGAAGGGTTGGCGCTTCGTCCAGCTGCACCATCTCAACTCCTCCCGCTTCCAAAGCTTGCCGCCATTCCCTCTCCTCACAACAATTCCAATGGATTTGTGTCTTCCAAGCCACACCGTGGACGCGGCCTTCGTTTTCGCACTTCATTCTTTTCCAAGGCACAGGCACGGCCACAAGGCGTTCCTCTTCCCGAACAACAACAACAACAAGAAGTCGCAGTGACAGTGAGTTCCAATCCTAACTGTGTGAGTGGGGATTCCATACGCCAGAGATTTCTTCATTTTTATGCTTCCCGCAGTCACAAGCTTCTTCCCAGTGCTTCTCTCGTCCCCGATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTCCAATTCAAGCCCATCTTCCTCGGCAAGGTTCCAAGACAAGTACCTTGTGCTGCTACTGCACAGAGATGCATCCGTACTAATGATATTGACAATGTTGGTCTAACTGCCAGACATCACACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTGTGGGCATGGGAGCTATCCACCTTAGAGTTTGGTTTGCCACCACACCGATTGTGGGTTAGTGTTTATGAAGATGATGATGAGGCCTTTCAAATATGGTCTCATGAGGTTGGTGTCCCAGTTGAACGTATAAAAAGGTTGGGAGAAGAGGACAACTTCTGGACTAGTGGAGTGACAGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATATGTAGATGCTGATCTCAATGATGATACAAGGTTTATAGAGTTCTACAACTTGGTATTCATGCAATACAACAAAAAAGATGATGGTTCTCTTGAACCTCTAAAACAGAAGAACATAGATACCGGCCTTGGACTGGAGCGTATGGCTCGCATTCTTCAACAGGTTCCAAACAATTATGAAACTGACTTGATTTTTCCCATCATAGAGAAGGCCTCTAAGTTAGCAAATGTTTCATATGGTATTGCTGATGATCAGACAAAGAAGAATCTGAAAATTATAGGAGATCACATGCGTGCAATTGTATATCTGATCTCTGATGGAGTTGTCCCATCAAATGTTGGGAGAGGTTATGTAGTTCGGCGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAGGGTGATGGTAAGGGAGACCTAGAAGGAGCTTTTTTACCAATTATTGCTGAGAAGGTAGTGGAATTAAGTACACACATTGATGCTGATGTGAAGAACAAAGCACCTCGTATCTTTGAGGAGCTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACCCTGGAGAGAGGAGAAAAGTTGCTTGGGGAGAAACTTGCTGATGCTTTATCAAGTGCAGAAAGAAATGAAACTGTGCCTTGCTTGGCTGGCGAAGATGTGTTTCTTTTGTATGATACTTATGGATACCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGGGTGAGTATTGACATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCGCACAATACTGTCAAACTTGCCATTGAAAATGGGGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACAGACTTCACTGTAACGCAATGATAGAAAGCCTAATGGTAAATGGAAATCCAGCTGTACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAACAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGCCGACCACGGTTTTCTATATATTTCAGAGGGTGATGATCAACCAAAAGCTGTTGTGGAGATAATAGATGTCCAGAAATCTTTAGGAAACATATTTGTTCACAAGGGTACAGTTCAAAAGGGTGTTGTAGAGGTTGGCAAGGAAGTAGAAGCATCAGTTGATGTGAAGCTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCTCTTAAACAAGTTATTGGTCAGGAGACCTCACAAGCTGGTTCATTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCATCGACCACTTCGTGACAGTGAGCTTGCTGAAATTGAAGTGCTAATCAATGGATGGATTGAGGATGCAACACTGCTTCAAACCAAAGTGATGGCCCTCGATGATGCAAAAAGTGCTGGGGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTGGTAGAGGTTCCTGGTGTATCAATGGAACTATGTGGTGGGACTCATGTCAATAATACTTCTGAAATTCGTGGTTTTAAAATAATATCAGAACAGGGTATTGCATCTGGAATCAGGCGTATTGAAGCTGTAGCTGGGGAAGCCTTCATTGAATATATCAATGCCCGAGACTTTTATCTGAAGCAGCTATGTTCCACTCTCAAAGTTAAACCAGAAGAAGTGACAACAAGGATAGAAAACCTTTTGGAGGAGTTGCGGTTAGTGAGAAATGAAAATGCTGCTGTGCGTGCAAAAGCAGCAGTCTACAAAGCTTCAGTTATTGCGAACAAAGCATTGTTGGTGGGGGATTCAAAGCAGTATAGAGTACTAGTTGAGTGCTTCGATGATGTTGATGCTGAATCACTTAAAAGTGCCGCAGAATACTTACTGGAAACACTAGCAGATCCAGCAGCTGTGGTATTGGGCTCATGTCCAGGTGAAGGTAAGGTTAGTCTAGTTGCTGCTTTTACTCCAGGGGTGGTTAATCAGGGGATTCAGGCAGGTAAGTTTATTGGACAAATAGCAAAATTATGTGGTGGTGGTGGAGGTGGAAGGCCCAATTTTGCTCAGGCTGGTGGGAGGAAGCCTGAAAATTTGGCAAGTGCCCTCGATAAGGCTCGGTCAGAGCTCATGGCTACTCTATGTGAAAAAGGGAATTGA 2949 0.4368 MEGLALRPAAPSQLLPLPKLAAIPSPHNNSNGFVSSKPHRGRGLRFRTSFFSKAQARPQGVPLPEQQQQQEVAVTVSSNPNCVSGDSIRQRFLHFYASRSHKLLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAATAQRCIRTNDIDNVGLTARHHTFFEMLGNFSFGDYFKKQAILWAWELSTLEFGLPPHRLWVSVYEDDDEAFQIWSHEVGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYVDADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQQVPNNYETDLIFPIIEKASKLANVSYGIADDQTKKNLKIIGDHMRAIVYLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGKGDLEGAFLPIIAEKVVELSTHIDADVKNKAPRIFEELKREELRFVQTLERGEKLLGEKLADALSSAERNETVPCLAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVKLAIENGENIAENVPDTEFIGYDRLHCNAMIESLMVNGNPAVQVSEGSNVEVLLNKTPFYAESGGQIADHGFLYISEGDDQPKAVVEIIDVQKSLGNIFVHKGTVQKGVVEVGKEVEASVDVKLRQRAKVHHTATHLLQAALKQVIGQETSQAGSLVAFDRLRFDFNFHRPLRDSELAEIEVLINGWIEDATLLQTKVMALDDAKSAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVNNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKVKPEEVTTRIENLLEELRLVRNENAAVRAKAAVYKASVIANKALLVGDSKQYRVLVECFDDVDAESLKSAAEYLLETLADPAAVVLGSCPGEGKVSLVAAFTPGVVNQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLASALDKARSELMATLCEKGN 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00015 982 FunFam Alanine--tRNA ligase 82 316 - -
Spst9g00015 982 FunFam Alanine--tRNA ligase, cytoplasmic 649 806 - -
Spst9g00015 982 SMART tRNA_SAD_4 749 792 IPR012947 GO:0004812|GO:0005524|GO:0043039
Spst9g00015 982 Coils Coil 828 848 - -
Spst9g00015 982 Gene3D - 796 857 - -
Spst9g00015 982 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 320 529 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Spst9g00015 982 Coils Coil 982 982 - -
Spst9g00015 982 Pfam DHHA1 domain 829 971 IPR003156 GO:0003676
Spst9g00015 982 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 749 792 IPR012947 GO:0004812|GO:0005524|GO:0043039
Spst9g00015 982 SUPERFAMILY Translation proteins 543 648 IPR009000 -
Spst9g00015 982 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 83 805 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Spst9g00015 982 PANTHER ALANYL-TRNA SYNTHETASE 75 972 - -
Spst9g00015 982 SUPERFAMILY ThrRS/AlaRS common domain 648 807 IPR018163 GO:0000166
Spst9g00015 982 CDD AlaRS_core 86 315 - -
Spst9g00015 982 Gene3D - 720 773 - -
Spst9g00015 982 NCBIfam alanine--tRNA ligase 88 956 IPR002318 GO:0000166|GO:0005737
Spst9g00015 982 SUPERFAMILY Class II aaRS and biotin synthetases 85 319 IPR045864 -
Spst9g00015 982 Gene3D - 865 973 - -
Spst9g00015 982 Gene3D - 659 794 - -
Spst9g00015 982 FunFam Alanine--tRNA ligase 720 773 - -
Spst9g00015 982 Pfam tRNA synthetases class II (A) 88 650 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Spst9g00015 982 Hamap Probable alanine--tRNA ligase, chloroplastic. 75 979 IPR027522 GO:0009507
Spst9g00015 982 Gene3D Bira Bifunctional Protein; Domain 2 83 316 IPR045864 -
Spst9g00015 982 Hamap Alanine--tRNA ligase [alaS]. 84 977 IPR023033 GO:0004813
Spst9g00015 982 PRINTS Alanyl-tRNA synthetase signature 273 284 IPR002318 GO:0000166|GO:0005737
Spst9g00015 982 PRINTS Alanyl-tRNA synthetase signature 300 313 IPR002318 GO:0000166|GO:0005737
Spst9g00015 982 PRINTS Alanyl-tRNA synthetase signature 375 388 IPR002318 GO:0000166|GO:0005737
Spst9g00015 982 PRINTS Alanyl-tRNA synthetase signature 351 367 IPR002318 GO:0000166|GO:0005737
Spst9g00015 982 PRINTS Alanyl-tRNA synthetase signature 151 162 IPR002318 GO:0000166|GO:0005737
Spst9g00015 982 FunFam Alanine--tRNA ligase 864 973 - -
Spst9g00015 982 Gene3D - 569 648 - -
Spst9g00015 982 FunFam Probable alanine--tRNA ligase, chloroplastic 534 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00015 Spst-Chr9 164520 170240 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00015 K01872 - gmx:100817906 1659.81