Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00014 ATGGAAACGAAGAATGAGATGAGTAGGGGAGTAGTGTTATGGAGCGTAGTAGTGATGATGACGGCAATAGTGGGAGGAAGCAGGGGAGAGCAATGCGGAAGACAAGCAGGGGGTGTGGTGTGCCCAGGGGGTCTATGCTGCAGCCAATACGGGTGGTGCGGCTCAACCATCGACTTCTGCGGCCAGGGATGCCAGAGCCAATGCACACCCGGGGGGAGCGATCTGAGCAGCATCATCCCCAGGAACACCTTCGACCAGATGCTCAAACATCGGAACGACGGAGCCTGCCCGGCCCACGGCTTCTACACCTACGATGCCTTCATCGCAGCAGCGAAGGCTTTCCCCAGCTTCGGCAACACCGGAGACACGGCCACTCGCAAGAGGGAAATTGGGGCCTTCTTGGGCCAGACGTCCCACGAAACAACCGGGGGATGGGCCAGTGCGCCGGACGGCCCATACGCTTGGGGATACTGCTTCGTGAGGGAACAAAACCCTAGTCCCTACTGCTCCCCGAGCACCCAATTCCCCTGCGCTCCCGGGCAACAGTACTACGGCAGAGGTCCCATCCAGATCTCCTGGAACTACAACTACGGAGCCTGTGGAAGAGCCATCGGGGTTGACTTGCTCAACAACCCAGACCTGGTCGCCACTGACCCTCTCATCTCCTTCAAGTCAGCCATCTGGTTCTGGATGACGCCCCAGTCACCCAAGCCATCCTGTCACGACGTCATCACCGGACTCTGGACCCCCTCCTCCGCCGATCAGGCCGCCGGCAGACTCCCCGGCTACGGCACTGTGACCAACATCATCAACGGCGGCCTCGAATGCGGGATAGGACAGGACAGCAGAGTCCAGGACCGCATCGGCTTCTACAAGAGATACTGTGACTTGCTCGGCGTTGCTTACGGCAACAACCTCGACTGCAACTCTCAGAGGCCCTTCGGCAATTCCCTTCTTCTCCATCCCCTCATCTCCTCTCCATCCTCCTCTTCTCATCGTTAA 1002 0.5918 METKNEMSRGVVLWSVVVMMTAIVGGSRGEQCGRQAGGVVCPGGLCCSQYGWCGSTIDFCGQGCQSQCTPGGSDLSSIIPRNTFDQMLKHRNDGACPAHGFYTYDAFIAAAKAFPSFGNTGDTATRKREIGAFLGQTSHETTGGWASAPDGPYAWGYCFVREQNPSPYCSPSTQFPCAPGQQYYGRGPIQISWNYNYGACGRAIGVDLLNNPDLVATDPLISFKSAIWFWMTPQSPKPSCHDVITGLWTPSSADQAAGRLPGYGTVTNIINGGLECGIGQDSRVQDRIGFYKRYCDLLGVAYGNNLDCNSQRPFGNSLLLHPLISSPSSSSHR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00014 333 ProSitePatterns Chitin recognition or binding domain signature. 41 60 IPR018371 GO:0008061
Spst9g00014 333 SUPERFAMILY Lysozyme-like 74 315 IPR023346 -
Spst9g00014 333 PIRSF Endochitinase 1 315 IPR016283 GO:0004568|GO:0005975
Spst9g00014 333 FunFam Endochitinase (Chitinase) 160 217 - -
Spst9g00014 333 FunFam Basic endochitinase 29 70 - -
Spst9g00014 333 SMART ChitinBD_3 31 68 IPR001002 GO:0008061
Spst9g00014 333 ProSitePatterns Chitinases family 19 signature 2. 221 231 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst9g00014 333 Gene3D Endochitinase, domain 2 161 217 - -
Spst9g00014 333 SUPERFAMILY Plant lectins/antimicrobial peptides 31 71 IPR036861 GO:0008061
Spst9g00014 333 Pfam Chitin recognition protein 31 68 IPR001002 GO:0008061
Spst9g00014 333 Gene3D - 78 309 - -
Spst9g00014 333 CDD chitinase_GH19 79 308 - -
Spst9g00014 333 ProSitePatterns Chitinases family 19 signature 1. 96 118 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst9g00014 333 PANTHER CHITINASE-RELATED 21 312 - -
Spst9g00014 333 Pfam Chitinase class I 78 308 IPR000726 GO:0004568|GO:0006032|GO:0016998
Spst9g00014 333 PRINTS Chitin-binding domain signature 47 54 IPR001002 GO:0008061
Spst9g00014 333 PRINTS Chitin-binding domain signature 54 61 IPR001002 GO:0008061
Spst9g00014 333 PRINTS Chitin-binding domain signature 39 47 IPR001002 GO:0008061
Spst9g00014 333 Gene3D - 29 70 IPR036861 GO:0008061
Spst9g00014 333 ProSiteProfiles Chitin-binding type-1 domain profile. 29 70 IPR001002 GO:0008061
Spst9g00014 333 CDD ChtBD1_GH19_hevein 30 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00014 Spst-Chr9 160348 161349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst9g00014 30 319 Glycoside Hydrolase AT3G12500 72.819 3.55e-158 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00014 K20547 - qsa:O6P43_002167 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00014 9 160348 161349 Spst9g00014 9 160348 161349 ECH