Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst9g00001 ATGGATTCTGGCGGCAATTCTTTACCATCTGCTCCTGATGGGGTTAAGAGGAAGGTGTGCTATTTCTATGATCCAGAGGTTGGGAATTACTATTATGGGCAAGGTCATCCTATGAAGCCACATCGTATACGGATGACACATGCTCTTCTTGCTCATTATGGATTGCTTCAGCACATGCAGGTCCATAAGCCATTTCCAGCTAGAGACAGGGATCTTTGTCGTTTTCACGCTGATGATTATGTTGCATTCCTTCGAAGCATAACTCCTGAAACACAGCAGGATCATCTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTTTTTGATGGCCTCTACTCTTTCTGTCAAACTTATGCAGGGGGTTCAGTTGGGGGTGCTGTTAAGTTAAATCATGATCAATGTGATATTGCTGTCAACTGGGCTGGTGGGTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATCTTAGAACTTCTTAAACAACATGAGCGTGTTCTATATGTGGACATCGATATCCACCATGGAGACGGTGTGGAAGAAGCATTCTATACTACTGACAGAGTCATGACTGTTTCTTTTCATAAATTTGGAGACTATTTTCCTGGTACTGGGGATGTGCGTGATATTGGATATGGAAAAGGAAAATACTACTCTCTTAATGTTCCGCTTGATGATGGCATTGATGATGAGAGTTATCATTTCTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTCAGGCCTGGTGCAGTAGTTCTCCAGTGTGGTGCTGATTCTCTATCTGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGACATGCAGAGTGTGTCAGATACATGAGATCATTCAACGTGCCCCTCTTGCTACTAGGTGGTGGTGGCTACACCATTCGGAATGTTGCTCGATGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACCAAATGCCGCAGCACGAGTATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCATCATTTACTCGAAGAAATTCAATCTAAGCTACTTGAGAATCTTTCCAAGCTGCAGCATGCTCCTAGTGTCCAATTTCAGGAAAGGCCTCCAGATTCTGATCTTGGAGAGGCAGATGAAGATCATGATGATGGAGATGAGACATGGGATCCAGATTCTGACATGGACATTGATGTTGAACGTGAGCTTGTACCAAGCAAGGTAAAGAAAGAAATTGCTGAACCTCAGCTCAATGATCTGGATGACCAGAGAAGTGGGGAGTTTTTGAGAGGCTCTGATACTGCAGTTGCTGAAACTTGCATGAAGGCTCTAGATATTTCTTCTCAGAAAGCTGATGAAGATAATGTGAAAGTTGAACAGAATACTGTGACTGAGTTGACTAAAGAGACAGACCTGAAGTGTCAAGCAACGTAG 1503 0.4265 MDSGGNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDQMPQHEYYEYFGPDYTLHVAPSNMENKNSHHLLEEIQSKLLENLSKLQHAPSVQFQERPPDSDLGEADEDHDDGDETWDPDSDMDIDVERELVPSKVKKEIAEPQLNDLDDQRSGEFLRGSDTAVAETCMKALDISSQKADEDNVKVEQNTVTELTKETDLKCQAT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst9g00001 500 PANTHER HISTONE DEACETYLASE 2-RELATED 7 360 - -
Spst9g00001 500 PIRSF HDAC_I_euk 5 494 IPR003084 GO:0004407|GO:0016575
Spst9g00001 500 Gene3D Histone deacetylase domain 15 388 IPR037138 -
Spst9g00001 500 FunFam Histone deacetylase 15 392 - -
Spst9g00001 500 MobiDBLite consensus disorder prediction 384 418 - -
Spst9g00001 500 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Spst9g00001 500 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Spst9g00001 500 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Spst9g00001 500 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Spst9g00001 500 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Spst9g00001 500 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Spst9g00001 500 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Spst9g00001 500 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Spst9g00001 500 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Spst9g00001 500 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Spst9g00001 500 Pfam Histone deacetylase domain 36 324 IPR023801 -
Spst9g00001 500 MobiDBLite consensus disorder prediction 400 418 - -
Spst9g00001 500 SUPERFAMILY Arginase/deacetylase 17 381 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst9g00001 Spst-Chr9 8327 30646 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst9g00001 K06067 - gmx:100795375 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst9g00001 9 8327 30646 Spst9g00001 9 8327 30646 ECH