Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g02332 ATGGACTCTTCTTCTTTGGATAATGTGTATTGCTTTCTCTTTATTGTTGAATCTTCTGTAAGTATCTCATCATTTCTTCTTCAATATTGTCATGAAGTGTTTCTTGAAGAAGTTGATCTTGAAGAGGAGCTTCAATTGGCATTGTTTCATACCCCATACGAAAAAAATCTTTTCCTAGATCGAGTTTTTGATGTTTTTGACCAAAAAAGAAATGGGGTAATTGAGTTTGACGAGTTTGTCCTTGCACTTAGTGTTTTCCATCCATATGCCCCCATAGATGAAAAAATTGATTTTGCATTCAAGCTCTATGACCTGAGGCAAACTGGATTTATTGAGCCAGAGGAAGTGAAGCAAATGGTTGTAGCCATTTTGATAGAATCAGAGGTGAATCTTCCTGATGATCTTCTTGAAGCAATTGTTGACAAGACAATTGCTGATGTGGATAAGGACAATGATGGTAAAATCAGCAAAGAAGATTGGAAAGCTTTTGTGAGTCAAAATCCATGCCTCTTAACAAACATGACACTTCCTTATTTGAAGGATATCACCAGTGTGTTTCCAAGTTTTCTTCTCAAAATGGAGGCAGAACTTTAA 594 0.3603 MDSSSLDNVYCFLFIVESSVSISSFLLQYCHEVFLEEVDLEEELQLALFHTPYEKNLFLDRVFDVFDQKRNGVIEFDEFVLALSVFHPYAPIDEKIDFAFKLYDLRQTGFIEPEEVKQMVVAILIESEVNLPDDLLEAIVDKTIADVDKDNDGKISKEDWKAFVSQNPCLLTNMTLPYLKDITSVFPSFLLKMEAEL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g02332 197 ProSiteProfiles EF-hand calcium-binding domain profile. 135 170 IPR002048 GO:0005509
Spst8g02332 197 Pfam EF-hand domain pair 94 163 IPR002048 GO:0005509
Spst8g02332 197 FunFam calcineurin B-like protein 3 23 196 - -
Spst8g02332 197 PRINTS Recoverin family signature 109 127 - -
Spst8g02332 197 PRINTS Recoverin family signature 62 83 - -
Spst8g02332 197 ProSiteProfiles EF-hand calcium-binding domain profile. 54 89 IPR002048 GO:0005509
Spst8g02332 197 ProSiteProfiles EF-hand calcium-binding domain profile. 91 126 IPR002048 GO:0005509
Spst8g02332 197 SUPERFAMILY EF-hand 42 189 IPR011992 -
Spst8g02332 197 PANTHER CALCINEURIN B 41 195 IPR045198 GO:0005509|GO:0019722|GO:0019900
Spst8g02332 197 ProSitePatterns EF-hand calcium-binding domain. 148 160 IPR018247 -
Spst8g02332 197 CDD EFh 95 165 IPR002048 GO:0005509
Spst8g02332 197 SMART efh_1 139 167 IPR002048 GO:0005509
Spst8g02332 197 SMART efh_1 95 123 IPR002048 GO:0005509
Spst8g02332 197 SMART efh_1 58 86 IPR002048 GO:0005509
Spst8g02332 197 Gene3D - 21 197 - -
Spst8g02332 197 Pfam EF hand 59 79 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g02332 Spst-Chr8 34393146 34400394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g02332 41 196 EF-hand Containing Proteins AT5G24270 63.462 2.45e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g02332 K06268 - gmx:100810494 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g02332 8 34393146 34400394 Spst8g02332 8 34393146 34400394 ECH