Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01846 AACATTAAATGCGCACTATCCACCGCTTCCAAGTACTTCGAGGTCGACGCCAATTTTGAAGGGGACCACCACGCCCTCGCCGACGCAATGCCTGGTGTTCTCTCCGCCGCCGCTGATTCTCTCTGCGCCGTCTGCGCCACCCACGCCTCCAAGAAGTGCTCGCGCTGCAAGGCTGTCATGTATTGCTCCCAAGAATGCCAGCTGTCACATTGGAGGTCTGGGCATAAGACAGTATGCAAGGATTTTTGTGAAGACAGTGTAAGAAGTTCGGCTCAAAATGGGGTAATTAATCGTGGGTTTAAGGCTTCCGCTGCTGGGGGTAAGAGCTCGTCTTCAATTGCGTTAATACCCAGTCGTGGAACAATTTACAGGCCAATCAAGCAGCCTAATGATGGACAGCTCCTCAACCAGTACAAGTTGCTGACGACTTCTGGAGCCTTCCCAAAGTGCCTCTCTGAGTCTCTGATGATTTCCTCCTTGTGGGCTCTTGAATTGTGGAAACAGTGCCTCTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAGAAGGGTCACCGCAGAGAATGCAGTTGTAATGATTGGTGCTTTCTTTGTGAATTTGAAACTCATGTTGAAAGAACAAGGCTAAGTTCACTTGCGTTTTCTCCTATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACATTGGGCTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCCATTGATACCATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAACCATCAGGAGACTACCCTTATTCAGCACATATTTGGTGGCCGTTTACAATCTGAGGTGGTTTGCTCAGAATGTGATAAGATTTCAAAACAGTATGAAAATATGATGGATTTGACAGTTGAAATTCATGGAGATGCTGCCTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAGGGAGCGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTAGTGTGAACTGTGCTCCAAATATTCTTACAATCGCTTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAAAGAATAGCCTTCCCTGAGACTTTAAATCTTAGCCCTTATATGAGCAAAGCTGGGGATGGATCCGATATTTACAAGCTATATGGTGTTGTAGTGCATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGACTTCCAGGGGAACTGGTACAGGATTGATGACTGGAAGGTTATGACTGTGGAGTTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTTTTGTATAGCAGGTGTAGTGCTCGGCCATCAGGCCTTCAAATTCAAACTAGTGAATCTCCGGGGATAGCAGAAGTTCAAACAACAAAAGTGGAAGTGGAGCCTGGACAAACTGAACAGGATGAATGCCTCCTCTCGAATATGAAAACTTTGACTTGTAGTAGAGATTCTGAGGTTTTAGCATCTGATAATAGTCCAGAATCAAAAGTTTCTTTCTCCTATGACTTCGAGTCCTCTGCTATATTGAACACAGAAGCCAAAAAAGAGCGGTTTGAGGATGTGAGCACAATTAATGTTGATTCAACCGGTATTGCAAATGAAATCTCTTGTAGTGCTATTGAATCAACATCTGTGCCTATTTTTCGAACCGTCAATGACTTGGGGGATGTAGATGTAACAGACATATCATTAGAAGAGACTTCTGGCTCCAAGGAAGAGCAATATGATACTGCTGCTATGGTTAGGTCTGGTCCTTGTCTGGGTTTACCAAATAACTCTTGCTTCTTTGATAAGCATTCTTCTATTTCAAGGGATGATCGAAACGTGGAAGAAGATTCAGAACACATAGCCGTGGTTAAAGGCAAGTTGAATGCAGCTAAAGATAATACATATTATGGTAATGGATATGTCAGTGCAAACGAGTTTTCTATTCCAGTTGAAGACGCCGGCATTCAAATTTCTGGCATCGCGTTTTCCCACTGA 2058 0.4373 NIKCALSTASKYFEVDANFEGDHHALADAMPGVLSAAADSLCAVCATHASKKCSRCKAVMYCSQECQLSHWRSGHKTVCKDFCEDSVRSSAQNGVINRGFKASAAGGKSSSSIALIPSRGTIYRPIKQPNDGQLLNQYKLLTTSGAFPKCLSESLMISSLWALELWKQCLSFTRPLVAYLLEKGHRRECSCNDWCFLCEFETHVERTRLSSLAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPPNHQETTLIQHIFGGRLQSEVVCSECDKISKQYENMMDLTVEIHGDAASLEECLDQFTARERLDGENMYKCEGCKDYVKAWKRLSVNCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSPYMSKAGDGSDIYKLYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVELEEVLSQGAYMLLYSRCSARPSGLQIQTSESPGIAEVQTTKVEVEPGQTEQDECLLSNMKTLTCSRDSEVLASDNSPESKVSFSYDFESSAILNTEAKKERFEDVSTINVDSTGIANEISCSAIESTSVPIFRTVNDLGDVDVTDISLEETSGSKEEQYDTAAMVRSGPCLGLPNNSCFFDKHSSISRDDRNVEEDSEHIAVVKGKLNAAKDNTYYGNGYVSANEFSIPVEDAGIQISGIAFSH 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01846 685 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 168 460 - -
Spst8g01846 685 SUPERFAMILY HIT/MYND zinc finger-like 39 81 - -
Spst8g01846 685 Pfam Ubiquitin carboxyl-terminal hydrolase 168 455 IPR001394 GO:0004843|GO:0016579
Spst8g01846 685 SUPERFAMILY Cysteine proteinases 168 460 IPR038765 -
Spst8g01846 685 CDD Peptidase_C19E 168 456 - -
Spst8g01846 685 Gene3D - 33 84 - -
Spst8g01846 685 FunFam Ubiquitin carboxyl-terminal hydrolase 15 159 466 - -
Spst8g01846 685 Pfam MYND finger 42 79 IPR002893 -
Spst8g01846 685 ProSitePatterns Zinc finger MYND-type signature. 42 79 IPR002893 -
Spst8g01846 685 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 151 458 IPR028889 -
Spst8g01846 685 ProSiteProfiles Zinc finger MYND-type profile. 42 79 IPR002893 -
Spst8g01846 685 Gene3D Cysteine proteinases 167 466 - -
Spst8g01846 685 FunFam Ubiquitin carboxyl-terminal hydrolase 15 34 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01846 Spst-Chr8 22495423 22504669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01846 7 463 Miscellaneous Gene Families AT4G31670 62.256 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01846 K11855 - gmx:100799652 1041.95