Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01680 ATGTATGAACCAAAAAACATCCTCATAACTGGAGCTGCTGGTTTCATAGCCTCTCATGTCACTACAAAGCTAATCAACAAGTACCCTAGCTACAAGATTGTAGCTCTTGATAAACTAGACTATTGCTCCACTTTCAAGAATTTGAAGTCATGTACATCATCACCAAACTTCAAATTTATTAAGGGTGATATAGCTACTGCTGATATTGTGAATCATGTTTTGATAGAAGAGAAAATAGACACCATTATGCATTTTGCTGCTCAAACCCATGTGGACAATTCATTTGGAAATTCCATGGAATTCACCTACAATAATATCTATGGCACTCATGTGCTTCTTGAAGCATGCAGGGTCACCGATTGTGTCAAAAGGTTCATTCATGTTAGCACAGATGAAGTCTATGGTGAAACAGACTTAGAGGATAATATTGGAAACCATGAGGCATCTCAGCTTCTACCCACCAATCCTTATTCTGCAACAAAAGCCGGTGCAGAGATGTTGGTCATGGCTTATCACAGATCTTATGGTCTTCCAGTTATAACTTCTAGAGGAAATAATGTGTATGGTCCCAACCAATATCCAGAAAAGCTTGTTCCTAAGTTCATCCTTCTTGCAATGAAGGGTGAGAAATTGCCAATCCATGGAGATGGATCCAATGTGAGGAGCTACCTCCACTGTGGGGATGTCGCAGAAGCTTTTGATGTCATACTTCACAAAGGAGAGATTGGCCAAATTTACAACATTGGCACCAAGAAAGAAAGGAGTGTGTTAGATGTTGCAAAGCAAATATGCAAACTCTTTAAATTGAATCCTAAAGATGTTATTGAGTTTGTTCAAGATAGGCCTTTCAATGATAAGAGATATTTTCTGGATGATCAAAAGCTCAAACGACTTGGTTGGGAGGAGAGAATTCCCTGGGAGGAAGGACTTATGATGACAATTGACTGGTACCAAAAGAATCCTGGTTGGTGGGGTGATGTTTCCGCTGCTTTAAACCCTCATCCACGTTTCTCAGCCATCAATCTCTCTGATGAAGCTCAATGGTCCTTTCAATATGGATACTCAAGGCTTGCCAGGTCATTTACTGAAGTTAGAAGCAACAATTCAGGATTCAAGTTTTTGATATATGGGAGGACAGGTTGGATAGGGGGGTTGTTGGGAAAGCTTTGTGATGAGGACAGTATTGATTGGGAATATGGAAGAGGGAGATTGCAAGATAGGAAATCACTTGAGGATGATATAAGGAGGGTAAAGCCAACCCATGTGTTGAATGCAGCTGGTGTTACAGGAAGGCCTAATGTTGATTGGTGTGAGTCACACAAGGTTGAAACTATAAGGACTAATGTTGTGGGGACTTTAACCCTGGCTGATGTTTGCAAGGAACATGACTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGACAAGGACCATCCTCTAGGATCAGGCATTGGGTTCAAGGAAGAGGACAAACCAAATTTCATTGGCTCCTTCTATTCAAAGACCAAGGCCATGGTGGAGGACCTTCTAAGAAATTATGAAAATGTCTGCACATTGAGAGTTAGAATGCCAATATCCTCAGATCTTAGCAATCCTAGAAACTTCATCACAAAGGTTTCTCGTTACAACAAAGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAACTCTTACCCATATCCATTGAAATGGCTAAGAGGAACTTAAGAGGGATATGGAACTTCACCAATCCAGGGGTGATTAGCCACAATCAGATATTAGAATTGTATAGGGATTACATAGACCCACAATTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAGGTAATAGTTGCTCCAAGGAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAAAGAGTTTCCAGAATTGTTGTCCATCAAAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1968 0.3974 MYEPKNILITGAAGFIASHVTTKLINKYPSYKIVALDKLDYCSTFKNLKSCTSSPNFKFIKGDIATADIVNHVLIEEKIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTDCVKRFIHVSTDEVYGETDLEDNIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPVITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGEIGQIYNIGTKKERSVLDVAKQICKLFKLNPKDVIEFVQDRPFNDKRYFLDDQKLKRLGWEERIPWEEGLMMTIDWYQKNPGWWGDVSAALNPHPRFSAINLSDEAQWSFQYGYSRLARSFTEVRSNNSGFKFLIYGRTGWIGGLLGKLCDEDSIDWEYGRGRLQDRKSLEDDIRRVKPTHVLNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHDLYMMNFATGCIFEYDKDHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLRNYENVCTLRVRMPISSDLSNPRNFITKVSRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNQILELYRDYIDPQFKWENFDLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSIIKFVFEPNKKT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01680 655 Gene3D - 363 655 - -
Spst8g01680 655 FunFam UDP-glucose 4,6-dehydratase 7 209 - -
Spst8g01680 655 Gene3D - 198 320 - -
Spst8g01680 655 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 362 655 - -
Spst8g01680 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 370 647 IPR036291 -
Spst8g01680 655 Pfam GDP-mannose 4,6 dehydratase 8 312 IPR016040 -
Spst8g01680 655 Pfam RmlD substrate binding domain 372 541 IPR029903 -
Spst8g01680 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Spst8g01680 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 336 - -
Spst8g01680 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 327 IPR036291 -
Spst8g01680 655 CDD dTDP_GD_SDR_e 5 321 IPR005888 GO:0008460|GO:0009225
Spst8g01680 655 Gene3D - 7 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01680 Spst-Chr8 19835154 19837597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01680 6 317 Miscellaneous Gene Families AT4G00110 24.776 1.10e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01680 K12450 - gmx:100776241 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01680 8 19835154 19837597 Spst8g01680 8 19835154 19837597 ECH