Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01671 ATGCTTCGAGCTCACATAGACGTTTTCACACCCTTCACTGCTTCACTCCACTCTAAGCCACTCAATTCCTCGCGCGTCCGTTCCTCTTCCGCTCCGACACGGCGTCGTCTGGCGACCACCGCCAGTCCTCGCGAGGCCAATCTCCGGCACCTCACTTCGCGCATTGTCCAACTCACTCGCCGGAAACAGCTTCGCCAGATTTTGGATGAGGTTGAGGTTTCGAAGAGGCGGTTTGGGAAACTGAACACGATTGTGATGAACGCGGTGGTGGAGGCTTGTGTTCATTGCGGTGATGTCGATTCGGCGATTAGGATATTCGAAGAGATGAAGAAGCGCGATGGTTGTGGTGTGGATACCGTCACCTATGCCACGCTTTTGAAGGGGTTAGGCGAGTCACGAAGAGTTGATGAGGCTTTTGAAATGCTTGAAACTGTGGAAAATGGCGCTGCCATGGGAAGTCCAAACTTATCAGCTCCTTTGATATTTGGTCTGCTAAATGCCTTAATCAAAACTGGAGACTTGCGTCGTGCACATGGTCTCCTTGCTCGTTATGGTTTTGTGTTTCGAGAAGGTGGCAAATTTTCGGTCTCTGTATACAACATACTAATGAAGGGCTACATAAACTCAGGCTATCCACACACTGCGATAAACATGCTTAATGAAATTTTACGTCAAGACATAATGCCGGACAGGCTCACATATAACACGCTAATTTTAGCCTGTGTTGAGAGTGAAAAGTTGGATACGGCAATGCAATTTTTTGAGGAAATGAAGGGCAGGTCTCATAAATTTCTTGATGATGATATGTTTCCAGATATTGTTACGTATACGACATTGCTTAAGTGTGTCCACAGTTGGCTCTCCAGCATCTCTCTCAGTTTATCTCTCTCTTTAATGCAGGGTTTTGGAAAGGCAAAGGATCTTGCTTCAGTTCTGAAAATAGTTCTGGAAATGAAATCTCGTTGTGAATTATACATTGATAGAACTGCTTACACTGCAATAATTGATGCTTTTCTAACATGTGGCTCAGTTAAGGGGGCTCTGTGTATTTTTGGAGAAATATTGAAACAAGCTGGTCTGAATCCAGAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTCTAGGAGATTATGATATAGTTAAAAATTTACATAAACGGATTTGGCCCGATTCATCAGGAACCATATTATTAGTTGCTCAAGAAGAAGCTGATCACCTCCTCATGGAAGCAGCTCTGAATGCTGGTCAGGTATTTCCCTGA 1281 0.4481 MLRAHIDVFTPFTASLHSKPLNSSRVRSSSAPTRRRLATTASPREANLRHLTSRIVQLTRRKQLRQILDEVEVSKRRFGKLNTIVMNAVVEACVHCGDVDSAIRIFEEMKKRDGCGVDTVTYATLLKGLGESRRVDEAFEMLETVENGAAMGSPNLSAPLIFGLLNALIKTGDLRRAHGLLARYGFVFREGGKFSVSVYNILMKGYINSGYPHTAINMLNEILRQDIMPDRLTYNTLILACVESEKLDTAMQFFEEMKGRSHKFLDDDMFPDIVTYTTLLKCVHSWLSSISLSLSLSLMQGFGKAKDLASVLKIVLEMKSRCELYIDRTAYTAIIDAFLTCGSVKGALCIFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDIVKNLHKRIWPDSSGTILLVAQEEADHLLMEAALNAGQVFP 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01671 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Spst8g01671 426 Pfam PPR repeat family 196 241 IPR002885 -
Spst8g01671 426 Pfam PPR repeat family 82 129 IPR002885 -
Spst8g01671 426 Gene3D Tetratricopeptide repeat domain 290 417 IPR011990 GO:0005515
Spst8g01671 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Spst8g01671 426 Pfam PPR repeat 330 356 IPR002885 -
Spst8g01671 426 Pfam PPR repeat 297 321 IPR002885 -
Spst8g01671 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 362 IPR002885 -
Spst8g01671 426 PANTHER OS09G0431600 PROTEIN 23 283 IPR044781 -
Spst8g01671 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 229 IPR002885 -
Spst8g01671 426 MobiDBLite consensus disorder prediction 20 37 - -
Spst8g01671 426 Gene3D Tetratricopeptide repeat domain 39 148 IPR011990 GO:0005515
Spst8g01671 426 MobiDBLite consensus disorder prediction 20 42 - -
Spst8g01671 426 Gene3D Tetratricopeptide repeat domain 153 289 IPR011990 GO:0005515
Spst8g01671 426 NCBIfam pentatricopeptide repeat 86 118 IPR002885 -
Spst8g01671 426 NCBIfam pentatricopeptide repeat 120 143 IPR002885 -
Spst8g01671 426 NCBIfam pentatricopeptide repeat 233 262 IPR002885 -
Spst8g01671 426 NCBIfam pentatricopeptide repeat 198 230 IPR002885 -
Spst8g01671 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 112 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01671 Spst-Chr8 19493666 19499391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01671 78 394 Miscellaneous Gene Families AT4G11690 24.214 1.74e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01671 - - gmx:100813146 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01671 8 19493666 19499391 Spst8g01671 8 19493666 19499391 ECH