Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01628 ATGGCTCCTCCCAGAGGTCGTGGTGGTCCTGGTGGTGGAGGTTTCAGGGGTGGTAGGGGTGATAGAGGTAGAGGAAGAGGCGGCGGAGGAAGAGGAGGAGACAGGGGTACGCCGTTTAAGGCCAGAGGTGGTGGCCGTGGAGGAGGGAGGGGAGGTGGCCGTGGAGGAGGTAGAGGTGGTGGCCGTGGTGGTGGCAGGGGTGGAATGAAGGGAGGGAGTAAAGTCGTGGTTCAACCACACAGACATGAGGGCATTTTCATTGCCAAGGGTAAAGAAGATGCCCTTGTCACTAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAGAAAAGGATTACTGTTCAGAACGAAGATGGGTCCAAAGACGAGTACAGAATTTGGAATCCTTTCCGCTCGAAGTTGGCTGCCGCCATTCTTGGTGGAGTTGACAACATATGGATTAAACCTGGTGCCAGAGTCCTTTACTTGGGAGCTGCTTCTGGAACAACTGTTTCTCATGTTTCTGACATTGTTGGCCCAACAGGAGTTGTCTATGCAGTAGAGTTTTCTCATAGAAGTGGACGTGATTTGGTTAATATGGCAAAGAAGCGCACTAATATTATACCCATTATTGAAGATGCTAGACATCCAGCTAAGTACAGGATGTTAGTTGGTATGGTTGATGTCATATTTTCTGATGTTGCCCAGCCGGATCAGGCGAGGATTTTGGGACTCAATGCTTCATATTATCTCAAAGTGGGAGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCTACAGTCCCTGCGGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTGAAGGCTGATCAATTCAAACCATTCGAGCAAGTCACCCTTGAACCATTCGAGAGGGACCATGCTTGTGTTGTTGGTGGATACAGAATGGCCAAGAAGAAAAAAGATGCTGCTGAGTAG 945 0.4836 MAPPRGRGGPGGGGFRGGRGDRGRGRGGGGRGGDRGTPFKARGGGRGGGRGGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGSKDEYRIWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKVGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMAKKKKDAAE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01628 314 MobiDBLite consensus disorder prediction 1 74 - -
Spst8g01628 314 Pfam Fibrillarin 77 304 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 PRINTS Fibrillarin signature 150 171 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 PRINTS Fibrillarin signature 282 303 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 PRINTS Fibrillarin signature 95 114 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 PRINTS Fibrillarin signature 175 192 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 PRINTS Fibrillarin signature 230 259 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 PRINTS Fibrillarin signature 200 229 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 PRINTS Fibrillarin signature 123 142 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 91 304 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 FunFam Fibrillarin like 1 72 127 - -
Spst8g01628 314 PIRSF Nop17p 42 307 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 Gene3D Vaccinia Virus protein VP39 128 305 IPR029063 -
Spst8g01628 314 SMART Fibrillarin_2 77 305 IPR000692 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 ProSitePatterns Fibrillarin signature. 175 189 IPR020813 GO:0003723|GO:0006364|GO:0008168
Spst8g01628 314 Gene3D Phosphorylase Kinase; domain 1 72 127 - -
Spst8g01628 314 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 75 301 IPR029063 -
Spst8g01628 314 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 8 309 - -
Spst8g01628 314 FunFam Fibrillarin like 1 128 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01628 Spst-Chr8 18774428 18777176 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01628 K14563 - gmx:100789137 500.745